Sequence Similarity Clusters for the Entities in PDB 1NWX

Entity #1 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 19 3179
95 % 17 19 3492 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 17 19 3562
70 % 17 19 3506
50 % 17 19 3329
40 % 17 19 3214
30 % 17 19 3037
Entity #11 | Chains: I
ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1912
95 % 19 24 2213 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 19 24 2270
70 % 174 228 85
50 % 214 392 42
40 % 318 595 21
30 % 318 595 36
Entity #12 | Chains: J
ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1854
95 % 19 24 2157 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.9
PDBFlex
90 % 19 24 2211
70 % 19 24 2223
50 % 213 374 54
40 % 213 374 75
30 % 213 374 91
Entity #13 | Chains: K
ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 27 1637
95 % 21 27 1943 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.7
PDBFlex
90 % 21 27 1985
70 % 168 199 98
50 % 215 382 45
40 % 215 382 63
30 % 215 382 78
Entity #14 | Chains: L
ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1932
95 % 19 24 2237 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 19 24 2295
70 % 19 24 2317
50 % 214 373 46
40 % 214 380 58
30 % 214 382 75
Entity #15 | Chains: M
ribosomal protein L18 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 22 2087
95 % 19 24 2236 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 19 24 2294
70 % 19 24 2296
50 % 213 376 53
40 % 213 376 73
30 % 213 376 89
Entity #16 | Chains: N
ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 19 3159
95 % 17 19 3468 Flexibility: Medium
Max RMSD: 7.0, Avg RMSD: 3.0
PDBFlex
90 % 17 19 3532
70 % 17 19 3474
50 % 17 19 3394
40 % 17 19 3262
30 % 17 19 3016
Entity #17 | Chains: O
ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1577
95 % 19 28 1854 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 19 28 1894
70 % 19 28 1912
50 % 214 379 44
40 % 214 387 57
30 % 214 387 76
Entity #18 | Chains: P
ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1601
95 % 19 28 1883 Flexibility: Medium
Max RMSD: 7.9, Avg RMSD: 3.7
PDBFlex
90 % 19 28 1923
70 % 19 28 1945
50 % 173 218 120
40 % 213 374 76
30 % 213 374 92
Entity #19 | Chains: Q
ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 28 1600
95 % 25 30 1752 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 25 30 1791
70 % 25 30 1800
50 % 25 30 1825
40 % 25 30 1813
30 % 25 30 1762
Entity #2 | Chains: 9
5S RIBOSOMAL RNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
ribosomal protein L23 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 26 1666
95 % 20 26 1972 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 20 26 2014
70 % 20 26 2024
50 % 167 198 131
40 % 281 459 45
30 % 281 459 62
Entity #21 | Chains: S
ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 25 1783
95 % 19 25 2110 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 19 25 2162
70 % 19 25 2173
50 % 213 377 52
40 % 213 379 70
30 % 213 379 86
Entity #22 | Chains: T
general stress protein Ctc protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 25 2176
95 % 18 25 2479 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 1.7
PDBFlex
90 % 18 25 2557
70 % 18 25 2546
50 % 18 25 2531
40 % 18 25 2491
30 % 18 25 2331
Entity #23 | Chains: U
ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 29 1506
95 % 20 29 1778 Flexibility: Medium
Max RMSD: 11.9, Avg RMSD: 5.0
PDBFlex
90 % 20 29 1821
70 % 61 184 173
50 % 216 378 49
40 % 216 378 68
30 % 216 378 84
Entity #24 | Chains: W
ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 26 1665
95 % 20 26 1953 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 20 26 1996
70 % 20 26 2008
50 % 20 26 2051
40 % 20 26 2026
30 % 276 445 66
Entity #25 | Chains: X
ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1812
95 % 19 24 2124 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 19 24 2175
70 % 19 24 2187
50 % 66 200 192
40 % 214 380 66
30 % 214 380 81
Entity #26 | Chains: Y
ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 3774
95 % 4 12 4142 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 4 12 4190
70 % 4 12 4117
50 % 144 232 122
40 % 144 243 140
30 % 144 244 150
Entity #27 | Chains: Z
ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 34 1263
95 % 25 34 1490 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 25 34 1511
70 % 25 34 1528
50 % 214 370 65
40 % 219 376 74
30 % 219 376 90
Entity #28 | Chains: 1
ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 20 2230
95 % 15 20 2527 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.5
PDBFlex
90 % 15 20 2601
70 % 15 20 2584
50 % 55 174 215
40 % 187 348 98
30 % 187 348 112
Entity #29 | Chains: 2
ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1597
95 % 19 28 1877 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 19 28 1919
70 % 59 179 176
50 % 66 202 190
40 % 66 202 208
30 % 66 202 226
Entity #3 | Chains: A
ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1858
95 % 19 24 2160 Flexibility: Low
Max RMSD: 7.5, Avg RMSD: 2.2
PDBFlex
90 % 19 24 2213
70 % 167 196 99
50 % 214 382 47
40 % 214 382 64
30 % 214 382 79
Entity #30 | Chains: 3
ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1598
95 % 19 28 1878 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.7
PDBFlex
90 % 19 28 1920
70 % 19 28 1940
50 % 167 200 130
40 % 214 371 77
30 % 214 371 94
Entity #31 | Chains: 4
ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 2119
95 % 13 22 2425 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 13 22 2498
70 % 155 320 49
50 % 155 323 88
40 % 155 323 107
30 % 155 323 121
Entity #4 | Chains: B
ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 27 1617
95 % 22 27 1937 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.5
PDBFlex
90 % 22 27 1978
70 % 22 27 1995
50 % 222 384 51
40 % 222 388 62
30 % 222 389 77
Entity #5 | Chains: C
ribosomal protein L4 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 29 1518
95 % 24 29 1791 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 24 29 1831
70 % 24 29 1844
50 % 172 201 129
40 % 220 381 67
30 % 220 381 83
Entity #6 | Chains: D
ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1894
95 % 19 24 2197 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 19 24 2250
70 % 169 198 96
50 % 220 380 48
40 % 220 380 65
30 % 220 380 80
Entity #7 | Chains: E
ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 22 2100
95 % 17 22 2404 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 17 22 2473
70 % 17 22 2467
50 % 172 231 114
40 % 212 384 60
30 % 316 584 40
Entity #8 | Chains: F
ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 16305
95 % 4 5 15142 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 5 14834
70 % 4 5 13876
50 % 134 147 181
40 % 171 300 109
30 % 171 303 122
Entity #9 | Chains: G
ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 21 2146
95 % 16 21 2508 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.1
PDBFlex
90 % 16 21 2530
70 % 39 63 555
50 % 80 238 152
40 % 80 241 164
30 % 80 244 176

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures