Sequence Similarity Clusters for the Entities in PDB 1NWX

Entity #1 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 19 2757
95 % 17 19 3409 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 17 19 3457
70 % 17 19 3421
50 % 17 19 3333
40 % 17 19 3236
30 % 17 19 3034
Entity #11 | Chains: I
ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1640
95 % 19 24 2172 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 19 24 2223
70 % 167 217 86
50 % 207 370 51
40 % 310 564 20
30 % 310 564 37
Entity #12 | Chains: J
ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1636
95 % 19 24 2164 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.9
PDBFlex
90 % 19 24 2213
70 % 19 24 2215
50 % 206 353 65
40 % 206 353 85
30 % 309 541 41
Entity #13 | Chains: K
ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 27 1385
95 % 21 27 1852 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.7
PDBFlex
90 % 21 27 1893
70 % 161 188 98
50 % 208 362 52
40 % 208 362 69
30 % 208 362 83
Entity #14 | Chains: L
ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1649
95 % 19 24 2180 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 19 24 2232
70 % 19 24 2233
50 % 200 333 67
40 % 207 358 67
30 % 207 360 82
Entity #15 | Chains: M
ribosomal protein L18 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 22 1793
95 % 19 24 2181 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 19 24 2233
70 % 19 24 2234
50 % 206 355 63
40 % 206 355 82
30 % 206 355 96
Entity #16 | Chains: N
ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 19 2761
95 % 17 19 3412 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 3.3
PDBFlex
90 % 17 19 3460
70 % 17 19 3426
50 % 17 19 3337
40 % 17 19 3238
30 % 17 19 3037
Entity #17 | Chains: O
ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 28 1348
95 % 19 28 1804
90 % 19 28 1842
70 % 19 28 1870
50 % 207 358 55
40 % 207 365 66
30 % 207 365 81
Entity #18 | Chains: P
ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 28 1353
95 % 19 28 1809
90 % 19 28 1846
70 % 19 28 1876
50 % 166 207 123
40 % 206 353 86
30 % 206 353 98
Entity #19 | Chains: Q
ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 28 1344
95 % 25 30 1674 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 25 30 1715
70 % 25 30 1728
50 % 25 30 1762
40 % 25 30 1768
30 % 25 30 1729
Entity #2 | Chains: 9
5S RIBOSOMAL RNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
ribosomal protein L23 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 26 1484
95 % 20 26 1992 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 20 26 2039
70 % 20 26 2053
50 % 160 187 138
40 % 207 359 76
30 % 274 437 63
Entity #21 | Chains: S
ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 25 1525
95 % 19 25 2052
90 % 19 25 2103
70 % 19 25 2117
50 % 206 356 61
40 % 206 358 79
30 % 206 358 93
Entity #22 | Chains: T
general stress protein Ctc protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 25 1834
95 % 18 25 2397 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 1.8
PDBFlex
90 % 18 25 2461
70 % 18 25 2464
50 % 18 25 2448
40 % 18 25 2421
30 % 18 25 2310
Entity #23 | Chains: U
ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 29 1283
95 % 20 29 1723 Flexibility: Medium
Max RMSD: 11.9, Avg RMSD: 5.1
PDBFlex
90 % 20 29 1764
70 % 61 175 171
50 % 209 358 57
40 % 209 358 73
30 % 209 358 87
Entity #24 | Chains: W
ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 26 1490
95 % 20 26 1999 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 20 26 2046
70 % 20 26 2059
50 % 20 26 2064
40 % 20 26 2058
30 % 269 424 66
Entity #25 | Chains: X
ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 24 1664
95 % 19 24 2198
90 % 19 24 2248
70 % 19 24 2245
50 % 66 190 194
40 % 207 359 74
30 % 207 359 88
Entity #26 | Chains: Y
ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 3587
95 % 4 12 4376 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 4 12 4407
70 % 4 12 4328
50 % 137 215 133
40 % 137 226 145
30 % 137 226 153
Entity #27 | Chains: Z
ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 34 1084
95 % 25 34 1467 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 25 34 1492
70 % 25 34 1490
50 % 167 207 126
40 % 212 355 83
30 % 212 355 97
Entity #28 | Chains: 1
ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 20 2112
95 % 15 20 2687 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.5
PDBFlex
90 % 15 20 2737
70 % 15 20 2728
50 % 55 165 215
40 % 181 328 97
30 % 181 328 110
Entity #29 | Chains: 2
ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1362
95 % 19 28 1815 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 19 28 1852
70 % 59 169 174
50 % 66 192 192
40 % 66 192 206
30 % 66 192 217
Entity #3 | Chains: A
ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 22 1755
95 % 19 24 2124 Flexibility: Low
Max RMSD: 7.5, Avg RMSD: 2.3
PDBFlex
90 % 19 24 2174
70 % 160 185 101
50 % 207 359 58
40 % 207 359 77
30 % 207 359 91
Entity #30 | Chains: 3
ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1361
95 % 19 28 1814 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.7
PDBFlex
90 % 19 28 1850
70 % 19 28 1881
50 % 160 189 137
40 % 207 351 87
30 % 207 351 99
Entity #31 | Chains: 4
ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1800
95 % 13 22 2364 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 13 22 2430
70 % 109 161 154
50 % 149 306 87
40 % 149 306 108
30 % 149 306 121
Entity #4 | Chains: B
ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 27 1379
95 % 22 27 1840 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 22 27 1879
70 % 22 27 1910
50 % 215 363 59
40 % 215 366 72
30 % 215 367 84
Entity #5 | Chains: C
ribosomal protein L4 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 29 1274
95 % 24 29 1710 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 24 29 1753
70 % 24 29 1769
50 % 165 190 136
40 % 213 359 78
30 % 213 359 92
Entity #6 | Chains: D
ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1629
95 % 19 24 2157 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 19 24 2207
70 % 162 187 97
50 % 213 360 54
40 % 213 360 70
30 % 213 360 85
Entity #7 | Chains: E
ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 22 1776
95 % 17 22 2332 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 17 22 2398
70 % 17 22 2400
50 % 165 219 115
40 % 205 363 68
30 % 308 554 39
Entity #8 | Chains: F
ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 16078
95 % 4 5 15007 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 4 5 14734
70 % 4 5 13823
50 % 127 136 184
40 % 164 278 113
30 % 164 286 122
Entity #9 | Chains: G
ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 2170
95 % 16 21 2423 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.2
PDBFlex
90 % 16 21 2489
70 % 39 63 538
50 % 80 232 147
40 % 80 235 158
30 % 80 238 166

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures