Sequence Similarity Clusters for the Entities in PDB 1NWX

Entity #1 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 19 2629
95 % 17 19 3282 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 17 19 3326
70 % 17 19 3300
50 % 17 19 3225
40 % 17 19 3138
30 % 17 19 2948
Entity #11 | Chains: I
ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1574
95 % 19 24 2094 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 19 24 2146
70 % 163 211 84
50 % 203 359 52
40 % 302 543 20
30 % 302 543 33
Entity #12 | Chains: J
ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1569
95 % 19 24 2083 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.9
PDBFlex
90 % 19 24 2132
70 % 19 24 2127
50 % 202 342 63
40 % 202 342 83
30 % 301 523 37
Entity #13 | Chains: K
ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 27 1323
95 % 21 27 1788 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.5
PDBFlex
90 % 21 27 1825
70 % 157 182 93
50 % 204 350 55
40 % 204 350 71
30 % 204 350 83
Entity #14 | Chains: L
ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1585
95 % 19 24 2103 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 19 24 2156
70 % 19 24 2149
50 % 196 322 68
40 % 203 347 68
30 % 203 349 82
Entity #15 | Chains: M
ribosomal protein L18 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 22 1718
95 % 19 24 2104 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 19 24 2157
70 % 19 24 2150
50 % 202 344 62
40 % 202 344 80
30 % 202 344 92
Entity #16 | Chains: N
ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 19 2633
95 % 17 19 3285 Flexibility: Medium
Max RMSD: 7.0, Avg RMSD: 3.1
PDBFlex
90 % 17 19 3329
70 % 17 19 3305
50 % 17 19 3229
40 % 17 19 3140
30 % 17 19 2951
Entity #17 | Chains: O
ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1293
95 % 19 28 1745 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 19 28 1780
70 % 19 28 1803
50 % 203 347 56
40 % 203 354 67
30 % 203 354 81
Entity #18 | Chains: P
ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 28 1297
95 % 19 28 1749
90 % 19 28 1784
70 % 19 28 1808
50 % 162 201 123
40 % 202 342 84
30 % 202 342 96
Entity #19 | Chains: Q
ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 28 1289
95 % 25 30 1616
90 % 25 30 1652
70 % 25 30 1665
50 % 25 30 1700
40 % 25 30 1704
30 % 25 30 1669
Entity #2 | Chains: 9
5S RIBOSOMAL RNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
ribosomal protein L23 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 26 1422
95 % 20 26 1911 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 20 26 1956
70 % 20 26 1979
50 % 156 181 132
40 % 203 348 74
30 % 270 426 59
Entity #21 | Chains: S
ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 25 1466
95 % 19 25 1980 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.7
PDBFlex
90 % 19 25 2027
70 % 19 25 2036
50 % 202 345 61
40 % 202 347 77
30 % 202 347 88
Entity #22 | Chains: T
general stress protein Ctc protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 25 1758
95 % 18 25 2307
90 % 18 25 2369
70 % 18 25 2365
50 % 18 25 2349
40 % 18 25 2334
30 % 18 25 2237
Entity #23 | Chains: U
ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 29 1233
95 % 20 29 1659 Flexibility: Medium
Max RMSD: 11.9, Avg RMSD: 4.7
PDBFlex
90 % 20 29 1694
70 % 61 169 169
50 % 205 346 57
40 % 205 346 75
30 % 205 346 86
Entity #24 | Chains: W
ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 26 1426
95 % 20 26 1916 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 20 26 1961
70 % 20 26 1985
50 % 20 26 1989
40 % 20 26 1982
30 % 265 413 64
Entity #25 | Chains: X
ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1599
95 % 19 24 2124 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 19 24 2175
70 % 19 24 2164
50 % 66 185 188
40 % 203 348 72
30 % 203 348 85
Entity #26 | Chains: Y
ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 12 3451
95 % 4 12 4229
90 % 4 12 4259
70 % 4 12 4193
50 % 133 204 128
40 % 133 215 142
30 % 133 215 157
Entity #27 | Chains: Z
ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 34 1035
95 % 25 34 1422 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 25 34 1445
70 % 25 34 1442
50 % 163 201 126
40 % 208 344 81
30 % 208 344 94
Entity #28 | Chains: 1
ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 20 2011
95 % 15 20 2591 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.6
PDBFlex
90 % 15 20 2638
70 % 15 20 2623
50 % 55 160 208
40 % 178 318 94
30 % 178 318 107
Entity #29 | Chains: 2
ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1304
95 % 19 28 1755 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 19 28 1790
70 % 59 164 171
50 % 66 187 187
40 % 66 187 203
30 % 66 187 216
Entity #3 | Chains: A
ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 22 1683
95 % 19 24 2048 Flexibility: Low
Max RMSD: 7.5, Avg RMSD: 2.1
PDBFlex
90 % 19 24 2095
70 % 156 179 96
50 % 203 347 58
40 % 203 347 78
30 % 203 347 89
Entity #30 | Chains: 3
ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1303
95 % 19 28 1754 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.8
PDBFlex
90 % 19 28 1788
70 % 19 28 1813
50 % 156 183 130
40 % 203 340 86
30 % 203 340 97
Entity #31 | Chains: 4
ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1727
95 % 13 22 2276 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 13 22 2340
70 % 106 156 149
50 % 146 296 86
40 % 146 296 106
30 % 146 296 120
Entity #4 | Chains: B
ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 27 1318
95 % 22 27 1780 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.6
PDBFlex
90 % 22 27 1817
70 % 22 27 1841
50 % 211 351 60
40 % 211 354 73
30 % 211 355 84
Entity #5 | Chains: C
ribosomal protein L4 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 29 1224
95 % 24 29 1645 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 24 29 1681
70 % 24 29 1704
50 % 161 184 129
40 % 209 348 76
30 % 209 348 87
Entity #6 | Chains: D
ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1562
95 % 19 24 2078 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 19 24 2127
70 % 156 179 94
50 % 207 347 59
40 % 207 347 79
30 % 207 347 90
Entity #7 | Chains: E
ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 22 1701
95 % 17 22 2246 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 17 22 2310
70 % 17 22 2302
50 % 161 213 116
40 % 201 352 69
30 % 300 534 36
Entity #8 | Chains: F
ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 15558
95 % 4 5 14583 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 5 14311
70 % 4 5 13445
50 % 123 130 179
40 % 160 269 110
30 % 160 277 121
Entity #9 | Chains: G
ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 2066
95 % 16 21 2330 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.1
PDBFlex
90 % 16 21 2393
70 % 38 62 497
50 % 79 229 141
40 % 79 232 153
30 % 79 235 166

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.