Sequence Similarity Clusters for the Entities in PDB 1NWX

Entity #1 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 19 2500
95 % 17 19 3137
90 % 17 19 3183
70 % 17 19 3153
50 % 17 19 3081
40 % 17 19 3006
30 % 17 19 2823
Entity #11 | Chains: I
ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 24 1480
95 % 19 24 1980
90 % 19 24 2033
70 % 153 176 91
50 % 199 330 56
40 % 199 334 66
30 % 296 509 31
Entity #12 | Chains: J
ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 24 1474
95 % 19 24 1968
90 % 19 24 2019
70 % 19 24 2032
50 % 19 24 2020
40 % 198 315 80
30 % 295 491 37
Entity #13 | Chains: K
ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 27 1249
95 % 21 27 1699
90 % 21 27 1729
70 % 155 180 88
50 % 200 321 59
40 % 200 321 73
30 % 200 321 84
Entity #14 | Chains: L
ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 24 1489
95 % 19 24 1987
90 % 19 24 2041
70 % 19 24 2049
50 % 194 310 62
40 % 199 323 67
30 % 199 325 80
Entity #15 | Chains: M
ribosomal protein L18 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1623
95 % 19 24 1988
90 % 19 24 2042
70 % 19 24 2050
50 % 198 315 67
40 % 198 315 81
30 % 198 315 94
Entity #16 | Chains: N
ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 19 2503
95 % 17 19 3140
90 % 17 19 3186
70 % 17 19 3158
50 % 17 19 3085
40 % 17 19 3008
30 % 17 19 2826
Entity #17 | Chains: O
ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 28 1210
95 % 19 28 1657
90 % 19 28 1684
70 % 19 28 1721
50 % 199 320 58
40 % 199 325 69
30 % 199 325 82
Entity #18 | Chains: P
ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 28 1214
95 % 19 28 1661
90 % 19 28 1688
70 % 19 28 1725
50 % 158 189 121
40 % 198 315 82
30 % 198 315 95
Entity #19 | Chains: Q
ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 28 1207
95 % 25 30 1530
90 % 25 30 1564
70 % 25 30 1592
50 % 25 30 1630
40 % 25 30 1647
30 % 25 30 1610
Entity #2 | Chains: 9
5S RIBOSOMAL RNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
ribosomal protein L23 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 26 1344
95 % 20 26 1816
90 % 20 26 1862
70 % 20 26 1887
50 % 154 179 126
40 % 199 321 74
30 % 266 399 60
Entity #21 | Chains: S
ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 25 1379
95 % 19 25 1868
90 % 19 25 1919
70 % 19 25 1948
50 % 198 318 63
40 % 198 318 77
30 % 198 320 88
Entity #22 | Chains: T
general stress protein Ctc protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 25 1653
95 % 18 25 2187
90 % 18 25 2256
70 % 18 25 2262
50 % 18 25 2240
40 % 18 25 2240
30 % 18 25 2141
Entity #23 | Chains: U
ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 29 1147
95 % 20 29 1571
90 % 20 29 1601
70 % 61 159 172
50 % 196 313 68
40 % 196 313 83
30 % 196 313 96
Entity #24 | Chains: W
ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 26 1349
95 % 20 26 1823
90 % 20 26 1869
70 % 20 26 1892
50 % 20 26 1902
40 % 20 26 1906
30 % 194 317 98
Entity #25 | Chains: X
ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 24 1502
95 % 19 24 2006
90 % 19 24 2058
70 % 19 24 2062
50 % 64 162 197
40 % 199 321 72
30 % 199 321 83
Entity #26 | Chains: Y
ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 12 3281
95 % 4 12 4040
90 % 4 12 4066
70 % 4 12 3989
50 % 131 192 130
40 % 131 193 144
30 % 131 193 160
Entity #27 | Chains: Z
ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 34 980
95 % 25 34 1352
90 % 25 34 1369
70 % 25 34 1392
50 % 154 181 128
40 % 199 317 86
30 % 199 317 100
Entity #28 | Chains: 1
ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 20 1891
95 % 15 20 2469
90 % 15 20 2523
70 % 15 20 2507
50 % 55 149 217
40 % 176 292 97
30 % 176 292 110
Entity #29 | Chains: 2
ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 28 1222
95 % 19 28 1666
90 % 19 28 1695
70 % 59 153 175
50 % 64 162 198
40 % 64 162 217
30 % 64 162 227
Entity #3 | Chains: A
ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1586
95 % 19 24 1927
90 % 19 24 1977
70 % 154 177 90
50 % 199 318 64
40 % 199 318 78
30 % 199 318 89
Entity #30 | Chains: 3
ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 28 1221
95 % 19 28 1665
90 % 19 28 1693
70 % 19 28 1730
50 % 154 181 125
40 % 199 313 85
30 % 199 313 99
Entity #31 | Chains: 4
ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 22 1632
95 % 13 22 2160
90 % 13 22 2228
70 % 104 139 159
50 % 144 269 93
40 % 144 269 114
30 % 144 269 125
Entity #4 | Chains: B
ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 27 1240
95 % 22 27 1689
90 % 22 27 1718
70 % 22 27 1756
50 % 207 324 61
40 % 207 325 76
30 % 207 326 86
Entity #5 | Chains: C
ribosomal protein L4 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 29 1140
95 % 24 29 1560
90 % 24 29 1593
70 % 24 29 1631
50 % 159 182 124
40 % 159 182 142
30 % 205 321 85
Entity #6 | Chains: D
ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 24 1468
95 % 19 24 1962
90 % 19 24 2013
70 % 154 177 89
50 % 203 321 60
40 % 203 321 75
30 % 203 321 87
Entity #7 | Chains: E
ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1603
95 % 17 22 2128
90 % 17 22 2195
70 % 17 22 2196
50 % 157 194 118
40 % 197 323 71
30 % 294 500 34
Entity #8 | Chains: F
ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 14801
95 % 4 5 13894
90 % 4 5 13642
70 % 4 5 12800
50 % 121 128 177
40 % 158 257 109
30 % 158 258 120
Entity #9 | Chains: G
ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 1951
95 % 16 21 2211
90 % 16 21 2279
70 % 38 62 462
50 % 79 217 140
40 % 79 220 154
30 % 79 223 168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.