Sequence Similarity Clusters for the Entities in PDB 1NWX

Entity #1 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 19 2596
95 % 17 19 3236 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 17 19 3284
70 % 17 19 3253
50 % 17 19 3180
40 % 17 19 3099
30 % 17 19 2906
Entity #11 | Chains: I
ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1558
95 % 19 24 2069 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 19 24 2123
70 % 162 204 84
50 % 202 352 53
40 % 301 534 20
30 % 301 534 33
Entity #12 | Chains: J
ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1554
95 % 19 24 2057 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.9
PDBFlex
90 % 19 24 2108
70 % 19 24 2108
50 % 19 24 2098
40 % 201 335 82
30 % 300 514 37
Entity #13 | Chains: K
ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 27 1308
95 % 21 27 1767 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.7
PDBFlex
90 % 21 27 1803
70 % 156 181 91
50 % 203 343 56
40 % 203 343 71
30 % 203 343 84
Entity #14 | Chains: L
ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1568
95 % 19 24 2077 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 19 24 2132
70 % 19 24 2131
50 % 195 321 66
40 % 202 343 67
30 % 202 345 81
Entity #15 | Chains: M
ribosomal protein L18 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 22 1699
95 % 19 24 2078 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 19 24 2133
70 % 19 24 2132
50 % 201 337 63
40 % 201 337 81
30 % 201 337 92
Entity #16 | Chains: N
ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 19 2599
95 % 17 19 3239 Flexibility: Medium
Max RMSD: 7.0, Avg RMSD: 3.1
PDBFlex
90 % 17 19 3287
70 % 17 19 3258
50 % 17 19 3184
40 % 17 19 3101
30 % 17 19 2909
Entity #17 | Chains: O
ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1278
95 % 19 28 1726 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 19 28 1760
70 % 19 28 1782
50 % 202 340 57
40 % 202 347 68
30 % 202 347 82
Entity #18 | Chains: P
ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1282
95 % 19 28 1730 Flexibility: Medium
Max RMSD: 7.9, Avg RMSD: 3.8
PDBFlex
90 % 19 28 1764
70 % 19 28 1787
50 % 161 197 121
40 % 201 335 83
30 % 201 335 94
Entity #19 | Chains: Q
ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 28 1274
95 % 25 30 1593 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 25 30 1629
70 % 25 30 1642
50 % 25 30 1678
40 % 25 30 1686
30 % 25 30 1653
Entity #2 | Chains: 9
5S RIBOSOMAL RNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
ribosomal protein L23 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 26 1405
95 % 20 26 1886 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 20 26 1932
70 % 20 26 1953
50 % 155 180 129
40 % 202 341 75
30 % 269 419 58
Entity #21 | Chains: S
ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 25 1450
95 % 19 25 1958 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.5
PDBFlex
90 % 19 25 2007
70 % 19 25 2018
50 % 201 338 62
40 % 201 338 80
30 % 201 340 89
Entity #22 | Chains: T
general stress protein Ctc protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 25 1736
95 % 18 25 2280 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 1.7
PDBFlex
90 % 18 25 2344
70 % 18 25 2345
50 % 18 25 2329
40 % 18 25 2309
30 % 18 25 2217
Entity #23 | Chains: U
ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 29 1219
95 % 20 29 1637 Flexibility: Medium
Max RMSD: 11.9, Avg RMSD: 5.0
PDBFlex
90 % 20 29 1672
70 % 61 169 167
50 % 204 339 58
40 % 204 339 76
30 % 204 339 87
Entity #24 | Chains: W
ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 26 1409
95 % 20 26 1891 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 20 26 1937
70 % 20 26 1959
50 % 20 26 1968
40 % 20 26 1962
30 % 264 409 65
Entity #25 | Chains: X
ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1582
95 % 19 24 2098 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 19 24 2151
70 % 19 24 2146
50 % 66 181 186
40 % 202 341 72
30 % 202 341 86
Entity #26 | Chains: Y
ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 12 3415
95 % 4 12 4191
90 % 4 12 4222
70 % 4 12 4149
50 % 132 318 125
40 % 132 318 142
30 % 132 210 154
Entity #27 | Chains: Z
ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 34 1026
95 % 25 34 1407
90 % 25 34 1428
70 % 25 34 1426
50 % 162 197 122
40 % 202 334 87
30 % 202 334 98
Entity #28 | Chains: 1
ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 20 1987
95 % 15 20 2561 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.5
PDBFlex
90 % 15 20 2610
70 % 15 20 2597
50 % 55 159 208
40 % 177 312 93
30 % 177 312 107
Entity #29 | Chains: 2
ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1289
95 % 19 28 1736 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 19 28 1770
70 % 59 163 168
50 % 66 181 187
40 % 66 181 205
30 % 66 181 214
Entity #3 | Chains: A
ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1664
95 % 19 24 2022
90 % 19 24 2071
70 % 155 178 93
50 % 202 340 59
40 % 202 340 78
30 % 202 340 90
Entity #30 | Chains: 3
ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1288
95 % 19 28 1735 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.8
PDBFlex
90 % 19 28 1768
70 % 19 28 1792
50 % 155 182 128
40 % 202 333 86
30 % 202 333 97
Entity #31 | Chains: 4
ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1708
95 % 13 22 2249 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 13 22 2315
70 % 105 149 151
50 % 145 289 87
40 % 145 289 108
30 % 145 289 120
Entity #4 | Chains: B
ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 27 1303
95 % 22 27 1760 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.6
PDBFlex
90 % 22 27 1796
70 % 22 27 1822
50 % 210 344 61
40 % 210 347 73
30 % 210 348 85
Entity #5 | Chains: C
ribosomal protein L4 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 29 1209
95 % 24 29 1623
90 % 24 29 1660
70 % 24 29 1681
50 % 160 183 126
40 % 208 341 77
30 % 208 341 88
Entity #6 | Chains: D
ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1547
95 % 19 24 2052 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 19 24 2103
70 % 155 178 92
50 % 206 340 60
40 % 206 340 79
30 % 206 340 91
Entity #7 | Chains: E
ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 22 1681
95 % 17 22 2219 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 17 22 2285
70 % 17 22 2283
50 % 160 206 113
40 % 200 345 69
30 % 299 525 36
Entity #8 | Chains: F
ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 15342
95 % 4 5 14374 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 5 14098
70 % 4 5 13225
50 % 122 129 182
40 % 159 268 109
30 % 159 273 119
Entity #9 | Chains: G
ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 2039
95 % 16 21 2303 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.0
PDBFlex
90 % 16 21 2368
70 % 38 62 492
50 % 79 229 134
40 % 79 232 149
30 % 79 235 162

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.