Sequence Similarity Clusters for the Entities in PDB 1NWX

Entity #1 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 19 2682
95 % 17 19 3331 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 17 19 3378
70 % 17 19 3340
50 % 17 19 3258
40 % 17 19 3170
30 % 17 19 2975
Entity #11 | Chains: I
ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1602
95 % 19 24 2124 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 19 24 2175
70 % 163 211 88
50 % 203 362 51
40 % 302 547 20
30 % 302 547 36
Entity #12 | Chains: J
ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1597
95 % 19 24 2114 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.9
PDBFlex
90 % 19 24 2163
70 % 19 24 2160
50 % 202 345 65
40 % 202 345 85
30 % 301 527 39
Entity #13 | Chains: K
ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 27 1352
95 % 21 27 1813 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.7
PDBFlex
90 % 21 27 1850
70 % 157 182 99
50 % 204 353 56
40 % 204 353 72
30 % 204 353 84
Entity #14 | Chains: L
ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1613
95 % 19 24 2133 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 19 24 2185
70 % 19 24 2180
50 % 196 325 69
40 % 203 350 69
30 % 203 352 83
Entity #15 | Chains: M
ribosomal protein L18 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 22 1748
95 % 19 24 2134 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 19 24 2186
70 % 19 24 2181
50 % 202 347 64
40 % 202 347 82
30 % 202 347 92
Entity #16 | Chains: N
ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 19 2686
95 % 17 19 3334 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 3.3
PDBFlex
90 % 17 19 3381
70 % 17 19 3345
50 % 17 19 3262
40 % 17 19 3172
30 % 17 19 2978
Entity #17 | Chains: O
ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 28 1321
95 % 19 28 1767
90 % 19 28 1804
70 % 19 28 1829
50 % 203 350 57
40 % 203 357 67
30 % 203 357 82
Entity #18 | Chains: P
ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 28 1325
95 % 19 28 1771
90 % 19 28 1808
70 % 19 28 1834
50 % 162 201 129
40 % 202 345 86
30 % 202 345 97
Entity #19 | Chains: Q
ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 28 1317
95 % 25 30 1637 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 25 30 1673
70 % 25 30 1687
50 % 25 30 1722
40 % 25 30 1727
30 % 25 30 1686
Entity #2 | Chains: 9
5S RIBOSOMAL RNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
ribosomal protein L23 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 26 1450
95 % 20 26 1934 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 20 26 1980
70 % 20 26 2005
50 % 156 181 140
40 % 203 351 76
30 % 270 429 61
Entity #21 | Chains: S
ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 25 1494
95 % 19 25 2006
90 % 19 25 2052
70 % 19 25 2064
50 % 202 348 63
40 % 202 350 79
30 % 202 350 89
Entity #22 | Chains: T
general stress protein Ctc protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 25 1790
95 % 18 25 2343 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 1.8
PDBFlex
90 % 18 25 2406
70 % 18 25 2403
50 % 18 25 2382
40 % 18 25 2364
30 % 18 25 2260
Entity #23 | Chains: U
ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 29 1260
95 % 20 29 1680 Flexibility: Medium
Max RMSD: 11.9, Avg RMSD: 5.1
PDBFlex
90 % 20 29 1717
70 % 61 172 172
50 % 205 349 59
40 % 205 349 77
30 % 205 349 87
Entity #24 | Chains: W
ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 26 1455
95 % 20 26 1939 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 20 26 1985
70 % 20 26 2011
50 % 20 26 2017
40 % 20 26 2007
30 % 265 416 67
Entity #25 | Chains: X
ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 24 1627
95 % 19 24 2154
90 % 19 24 2204
70 % 19 24 2195
50 % 66 188 191
40 % 203 351 73
30 % 203 351 86
Entity #26 | Chains: Y
ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 3512
95 % 4 12 4290 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 4 12 4324
70 % 4 12 4246
50 % 133 207 134
40 % 133 218 147
30 % 133 218 158
Entity #27 | Chains: Z
ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 34 1058
95 % 25 34 1440 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 25 34 1463
70 % 25 34 1462
50 % 163 201 131
40 % 208 347 83
30 % 208 347 94
Entity #28 | Chains: 1
ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 20 2050
95 % 15 20 2635 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.5
PDBFlex
90 % 15 20 2684
70 % 15 20 2667
50 % 55 163 208
40 % 178 321 96
30 % 178 321 109
Entity #29 | Chains: 2
ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1332
95 % 19 28 1777 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 19 28 1814
70 % 59 167 173
50 % 66 190 190
40 % 66 190 204
30 % 66 190 216
Entity #3 | Chains: A
ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 22 1712
95 % 19 24 2077 Flexibility: Low
Max RMSD: 7.5, Avg RMSD: 2.3
PDBFlex
90 % 19 24 2125
70 % 156 179 101
50 % 203 350 60
40 % 203 350 80
30 % 203 350 90
Entity #30 | Chains: 3
ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1331
95 % 19 28 1776 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.7
PDBFlex
90 % 19 28 1812
70 % 19 28 1839
50 % 156 183 137
40 % 203 343 87
30 % 203 343 98
Entity #31 | Chains: 4
ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1757
95 % 13 22 2309 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 13 22 2374
70 % 106 156 153
50 % 146 299 88
40 % 146 299 110
30 % 146 299 121
Entity #4 | Chains: B
ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 27 1347
95 % 22 27 1803 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 22 27 1840
70 % 22 27 1867
50 % 211 354 62
40 % 211 357 75
30 % 211 358 85
Entity #5 | Chains: C
ribosomal protein L4 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 29 1251
95 % 24 29 1666 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 24 29 1704
70 % 24 29 1725
50 % 161 184 136
40 % 209 351 78
30 % 209 351 88
Entity #6 | Chains: D
ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1590
95 % 19 24 2109 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 19 24 2158
70 % 156 179 100
50 % 207 350 61
40 % 207 350 81
30 % 207 350 91
Entity #7 | Chains: E
ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 22 1732
95 % 17 22 2279 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 17 22 2345
70 % 17 22 2340
50 % 161 213 119
40 % 201 355 71
30 % 300 538 38
Entity #8 | Chains: F
ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 15752
95 % 4 5 14745 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 4 5 14472
70 % 4 5 13590
50 % 123 130 183
40 % 160 270 113
30 % 160 278 122
Entity #9 | Chains: G
ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 2109
95 % 16 21 2366 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.2
PDBFlex
90 % 16 21 2430
70 % 38 62 511
50 % 79 229 146
40 % 79 232 155
30 % 79 235 166

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.