Sequence Similarity Clusters for the Entities in PDB 1NVV

Entity #1 | Chains: Q
Transforming protein p21/H-RAS-1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 15846
95 % 162 226 81 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 167 231 80
70 % 169 233 94
50 % 196 282 95
40 % 298 473 21
30 % 451 812 16
Entity #2 | Chains: R
Transforming protein p21/H-RAS-1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 60 509
95 % 163 226 81 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 168 231 80
70 % 170 233 94
50 % 197 282 95
40 % 299 473 21
30 % 452 812 16
Entity #3 | Chains: S
Son of sevenless protein homolog 1 protein, length: 481 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 19 2671
95 % 5 19 3300 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.2
PDBFlex
90 % 5 19 3347
70 % 5 19 3305
50 % 5 19 3221
40 % 5 19 3137
30 % 5 19 2938

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures