Sequence Similarity Clusters for the Entities in PDB 1NVV

Entity #1 | Chains: Q
Transforming protein p21/H-RAS-1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 16228
95 % 168 233 79 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 173 238 79
70 % 175 240 93
50 % 202 289 97
40 % 305 483 21
30 % 458 822 16
Entity #2 | Chains: R
Transforming protein p21/H-RAS-1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 60 518
95 % 169 233 79 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 174 238 79
70 % 176 240 93
50 % 203 289 97
40 % 306 483 21
30 % 459 822 16
Entity #3 | Chains: S
Son of sevenless protein homolog 1 protein, length: 481 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 19 2735
95 % 5 19 3384 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.2
PDBFlex
90 % 5 19 3435
70 % 5 19 3387
50 % 5 19 3304
40 % 5 19 3215
30 % 5 19 3010

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures