Sequence Similarity Clusters for the Entities in PDB 1NVP

Entity #1 | Chains: E
5'-D(*GP*GP*GP*GP*GP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*G)-3' dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
5'-D(*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*CP*CP*CP*CP*C)-3' dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
TATA box binding protein protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 4301
95 % 4 9 4762
90 % 4 9 4782
70 % 18 33 949
50 % 20 37 888
40 % 22 41 828
30 % 23 42 772
Entity #4 | Chains: B
Transcription initiation factor IIA alpha chain protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72420
95 % 1 1 50335
90 % 1 1 47797
70 % 1 1 41954
50 % 1 1 35779
40 % 1 1 31492
30 % 1 1 26593
Entity #5 | Chains: C
Transcription initiation factor IIA beta chain protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71147
95 % 1 1 49345
90 % 1 1 46843
70 % 1 1 41115
50 % 1 1 35072
40 % 2 3 16666
30 % 2 3 14275
Entity #6 | Chains: D
Transcription initiation factor IIA gamma chain protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 7382
95 % 1 9 7957
90 % 1 9 7911
70 % 1 9 7669
50 % 1 9 7050
40 % 1 9 6549
30 % 2 17 3313

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.