Sequence Similarity Clusters for the Entities in PDB 1NVP

Entity #1 | Chains: E
5'-D(*GP*GP*GP*GP*GP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*G)-3' dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
5'-D(*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*CP*CP*CP*CP*C)-3' dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
TATA box binding protein protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5264
95 % 4 8 5398
90 % 4 8 5412
70 % 18 32 910
50 % 18 32 950
40 % 20 36 871
30 % 23 41 724
Entity #4 | Chains: B
Transcription initiation factor IIA alpha chain protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68088
95 % 1 1 47247
90 % 1 1 44961
70 % 1 1 39673
50 % 1 1 33969
40 % 1 1 29914
30 % 1 1 25240
Entity #5 | Chains: C
Transcription initiation factor IIA beta chain protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66862
95 % 1 1 46294
90 % 1 1 44045
70 % 1 1 38858
50 % 1 1 33285
40 % 2 3 15675
30 % 2 3 13417
Entity #6 | Chains: D
Transcription initiation factor IIA gamma chain protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 6838
95 % 1 9 7381
90 % 1 9 7350
70 % 1 9 7117
50 % 1 9 6582
40 % 1 9 6127
30 % 2 17 3126

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.