Sequence Similarity Clusters for the Entities in PDB 1NVP

Entity #1 | Chains: E
5'-D(*GP*GP*GP*GP*GP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*G)-3' dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
5'-D(*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*CP*CP*CP*CP*C)-3' dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
TATA box binding protein protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 5116
95 % 4 9 5080 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 4 9 5108
70 % 20 37 873
50 % 21 38 914
40 % 23 42 851
30 % 24 43 809
Entity #4 | Chains: B
Transcription initiation factor IIA alpha chain protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56104
95 % 1 1 46041
90 % 1 1 43786
70 % 1 1 39891
50 % 1 1 33847
40 % 1 1 29641
30 % 1 1 24744
Entity #5 | Chains: C
Transcription initiation factor IIA beta chain protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56107
95 % 1 1 46044
90 % 1 1 45445
70 % 1 1 39892
50 % 1 1 33848
40 % 1 1 29642
30 % 1 1 24745
Entity #6 | Chains: D
Transcription initiation factor IIA gamma chain protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 8174
95 % 1 9 8326
90 % 1 9 8255
70 % 1 9 7950
50 % 1 9 7300
40 % 1 9 6733
30 % 2 19 2984

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures