Sequence Similarity Clusters for the Entities in PDB 1NVM

Entity #1 | Chains: A,C,E,G
4-hydroxy-2-oxovalerate aldolase protein, length: 345 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18786
95 % 1 1 16817 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 1 1 16491
70 % 1 1 15382
50 % 3 4 6812
40 % 3 4 6335
30 % 3 4 5662
Entity #2 | Chains: B,D,F,H
acetaldehyde dehydrogenase (acylating) protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19304
95 % 1 1 17166 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 16825
70 % 1 1 15664
50 % 3 4 6847
40 % 3 4 6365
30 % 3 4 5691

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures