Sequence Similarity Clusters for the Entities in PDB 1NVM

Entity #1 | Chains: A,C,E,G
4-hydroxy-2-oxovalerate aldolase protein, length: 345 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18549
95 % 1 1 16627 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 1 1 16297
70 % 1 1 15205
50 % 3 4 6728
40 % 3 4 6257
30 % 3 4 5596
Entity #2 | Chains: B,D,F,H
acetaldehyde dehydrogenase (acylating) protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19061
95 % 1 1 16969 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 16624
70 % 1 1 15481
50 % 3 4 6762
40 % 3 4 6286
30 % 3 4 5624

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.