Sequence Similarity Clusters for the Entities in PDB 1NVM

Entity #1 | Chains: A,C,E,G
4-hydroxy-2-oxovalerate aldolase protein, length: 345 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18272
95 % 1 1 16367 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 1 1 16037
70 % 1 1 14948
50 % 3 4 6615
40 % 3 4 6157
30 % 3 4 5513
Entity #2 | Chains: B,D,F,H
acetaldehyde dehydrogenase (acylating) protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18773
95 % 1 1 16701 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 1 1 16356
70 % 1 1 15222
50 % 3 4 6648
40 % 3 4 6186
30 % 3 4 5540

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.