Sequence Similarity Clusters for the Entities in PDB 1NVD

Entity #1 | Chains: A,B
3-DEHYDROQUINATE SYNTHASE protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 10 2134
95 % 4 10 2715 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.2
PDBFlex
90 % 4 10 2763
70 % 4 10 2754
50 % 5 11 2427
40 % 5 11 2405
30 % 16 24 1154

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures