Sequence Similarity Clusters for the Entities in PDB 1NUB

Entity #1 | Chains: A,B
BASEMENT MEMBRANE PROTEIN BM-40 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39808
95 % 1 3 14379 Flexibility: Medium
Max RMSD: 4.7, Avg RMSD: 3.0
PDBFlex
90 % 1 3 14145
70 % 1 3 13297
50 % 1 3 11820
40 % 1 3 10711
30 % 1 3 9316

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures