Sequence Similarity Clusters for the Entities in PDB 1NU9

Entity #1 | Chains: A,D
Thrombin light and heavy chains protein, length: 291 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 22 2368
95 % 292 378 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 295 385 56
70 % 304 409 47
50 % 304 409 85
40 % 1488 1873 4
30 % 1497 1887 7
Entity #2 | Chains: C,F
Staphylocoagulase protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 20615
95 % 2 2 17360 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.0
PDBFlex
90 % 2 2 16950
70 % 2 2 15732
50 % 2 2 13792
40 % 2 2 12334
30 % 2 2 10411

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures