Sequence Similarity Clusters for the Entities in PDB 1NU7

Entity #1 | Chains: A,E
Thrombin light chain protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 253 334 52
95 % 258 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 258 342 67
70 % 258 342 79
50 % 258 342 111
40 % 258 342 134
30 % 258 342 147
Entity #2 | Chains: B,F
Thrombin heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 254 332 53
95 % 286 378 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 289 385 56
70 % 296 409 47
50 % 296 409 85
40 % 1456 1873 4
30 % 1464 1887 7
Entity #3 | Chains: D,H
Staphylocoagulase protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20615
95 % 1 2 17360 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.0
PDBFlex
90 % 1 2 16950
70 % 1 2 15732
50 % 1 2 13792
40 % 1 2 12334
30 % 1 2 10411

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures