Sequence Similarity Clusters for the Entities in PDB 1NU7

Entity #1 | Chains: A,E
Thrombin light chain protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 254 335 45
95 % 255 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 255 336 65
70 % 256 338 77
50 % 256 338 102
40 % 256 338 125
30 % 256 338 137
Entity #2 | Chains: B,F
Thrombin heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 290 55
95 % 284 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 287 381 38
70 % 294 405 45
50 % 294 405 80
40 % 1330 1685 4
30 % 1431 1834 6
Entity #3 | Chains: D,H
Staphylocoagulase protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19569
95 % 1 2 17325 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.0
PDBFlex
90 % 1 2 16973
70 % 1 2 15789
50 % 1 2 13805
40 % 1 2 12372
30 % 1 2 10626

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.