Sequence Similarity Clusters for the Entities in PDB 1NU7

Entity #1 | Chains: A,E
Thrombin light chain protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 254 335 45
95 % 255 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 255 336 66
70 % 256 338 78
50 % 256 338 107
40 % 256 338 131
30 % 256 338 136
Entity #2 | Chains: B,F
Thrombin heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 290 57
95 % 284 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 287 381 39
70 % 294 405 46
50 % 294 405 84
40 % 1337 1698 4
30 % 1438 1848 6
Entity #3 | Chains: D,H
Staphylocoagulase protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19817
95 % 1 2 17524 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.0
PDBFlex
90 % 1 2 17177
70 % 1 2 15977
50 % 1 2 13957
40 % 1 2 12502
30 % 1 2 10742

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures