Sequence Similarity Clusters for the Entities in PDB 1NTZ

Entity #1 | Chains: A
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 24 1256
95 % 10 29 1304 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 10 33 1093
70 % 10 50 646
50 % 10 50 693
40 % 10 50 726
30 % 16 58 609
Entity #10 | Chains: J
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 27 1028
95 % 10 32 1163 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.3
PDBFlex
90 % 10 32 1190
70 % 10 49 663
50 % 10 49 708
40 % 10 49 738
30 % 10 49 736
Entity #11 | Chains: K
Ubiquinol-cytochrome C reductase complex 6.4 kDa protein protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 6029
95 % 7 21 2197 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 7 22 2049
70 % 7 25 1608
50 % 7 25 1652
40 % 7 25 1672
30 % 7 25 1643
Entity #2 | Chains: B
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 25 1257
95 % 10 30 1305 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 10 34 1167
70 % 10 51 647
50 % 10 51 694
40 % 10 51 727
30 % 10 51 723
Entity #3 | Chains: C
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 25 1181
95 % 10 25 1587 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 10 29 1263
70 % 10 49 649
50 % 16 57 588
40 % 18 65 460
30 % 18 65 455
Entity #4 | Chains: D
cytochrome c1 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 26 1064
95 % 10 29 1316 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 10 32 1149
70 % 10 46 704
50 % 16 54 624
40 % 16 54 661
30 % 18 62 474
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 21 1693
95 % 10 24 1711 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 10 30 1312
70 % 10 44 764
50 % 16 52 682
40 % 18 60 502
30 % 18 60 499
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 22 1388
95 % 10 29 1244 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 10 32 1187
70 % 10 49 661
50 % 10 49 704
40 % 10 49 734
30 % 10 49 733
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 24 1246
95 % 10 29 1245 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 10 32 1189
70 % 10 35 1085
50 % 10 49 707
40 % 10 49 737
30 % 10 49 735
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 21 1659
95 % 10 30 1246 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 10 44 714
70 % 10 48 671
50 % 10 48 716
40 % 10 48 746
30 % 10 48 745
Entity #9 | Chains: I
Ubiquinol-cytochrome C reductase 8 kDa protein protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 7015
95 % 3 7 7589 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 3 7 7536
70 % 3 10 4332
50 % 3 10 4155
40 % 3 10 3975
30 % 3 10 3683

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures