Sequence Similarity Clusters for the Entities in PDB 1NTM

Entity #1 | Chains: A
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 23 1234
95 % 5 28 1286
90 % 5 29 1236
70 % 5 46 666
50 % 5 46 711
40 % 5 46 747
30 % 9 54 637
Entity #10 | Chains: J
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 26 980
95 % 5 31 1132
90 % 5 31 1161
70 % 5 45 685
50 % 5 45 730
40 % 5 45 766
30 % 5 45 758
Entity #11 | Chains: K
Ubiquinol-cytochrome C reductase complex 6.4 kDa protein protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 5538
95 % 2 21 2015
90 % 2 22 1874
70 % 2 22 1902
50 % 2 22 1907
40 % 2 22 1911
30 % 2 22 1841
Entity #2 | Chains: B
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 24 1237
95 % 5 29 1288
90 % 5 33 1130
70 % 5 47 667
50 % 5 47 713
40 % 5 47 749
30 % 5 47 739
Entity #3 | Chains: C
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 24 1124
95 % 5 24 1549
90 % 5 28 1240
70 % 5 45 668
50 % 9 53 598
40 % 10 61 454
30 % 10 61 450
Entity #4 | Chains: D
cytochrome c1 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 25 1034
95 % 5 28 1300
90 % 5 28 1319
70 % 5 42 754
50 % 9 50 651
40 % 9 50 684
30 % 10 58 473
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 21 1536
95 % 5 24 1563
90 % 5 27 1450
70 % 5 41 810
50 % 9 49 682
40 % 10 57 487
30 % 10 57 488
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 22 1258
95 % 5 28 1228
90 % 5 31 1155
70 % 5 45 682
50 % 5 45 725
40 % 5 45 761
30 % 5 45 754
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 23 1225
95 % 5 28 1230
90 % 5 31 1159
70 % 5 31 1197
50 % 5 45 729
40 % 5 45 765
30 % 5 45 757
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 21 1502
95 % 5 24 1723
90 % 5 38 849
70 % 5 41 794
50 % 5 41 840
40 % 5 41 867
30 % 5 41 854
Entity #9 | Chains: I
Ubiquinol-cytochrome C reductase 8 kDa protein protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 6450
95 % 1 7 6986
90 % 1 7 6949
70 % 1 7 6754
50 % 1 7 6246
40 % 1 7 5831
30 % 1 7 5218

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.