Sequence Similarity Clusters for the Entities in PDB 1NTK

Entity #1 | Chains: A
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 24 1190
95 % 7 29 1251 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 7 30 1195
70 % 7 47 674
50 % 7 47 727
40 % 7 47 759
30 % 13 55 634
Entity #10 | Chains: J
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 27 965
95 % 7 32 1112 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.2
PDBFlex
90 % 7 32 1135
70 % 7 46 696
50 % 7 46 744
40 % 7 46 774
30 % 7 46 769
Entity #11 | Chains: K
Ubiquinol-cytochrome C reductase complex 6.4 kDa protein protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 5757
95 % 4 21 2097
90 % 4 22 1940
70 % 4 22 1962
50 % 4 22 1971
40 % 4 22 1964
30 % 4 22 1893
Entity #2 | Chains: B
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 25 1191
95 % 7 30 1252
90 % 7 34 1115
70 % 7 48 675
50 % 7 48 728
40 % 7 48 760
30 % 7 48 755
Entity #3 | Chains: C
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 25 1116
95 % 7 25 1514 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 7 29 1201
70 % 7 46 676
50 % 13 54 610
40 % 14 62 457
30 % 14 62 458
Entity #4 | Chains: D
cytochrome c1 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 26 1002
95 % 7 29 1261 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 7 29 1289
70 % 7 43 752
50 % 13 51 654
40 % 13 51 686
30 % 14 59 478
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, MITOCHONDRIAL protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 21 1608
95 % 7 24 1624 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.5
PDBFlex
90 % 7 27 1514
70 % 7 41 833
50 % 13 49 721
40 % 14 57 498
30 % 14 57 499
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 22 1312
95 % 7 29 1182 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 7 32 1132
70 % 7 46 691
50 % 7 46 741
40 % 7 46 771
30 % 7 46 765
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 24 1177
95 % 7 29 1185 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 7 32 1134
70 % 7 32 1165
50 % 7 46 742
40 % 7 46 773
30 % 7 46 768
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 21 1576
95 % 7 24 1781 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 7 38 870
70 % 7 42 792
50 % 7 42 840
40 % 7 42 872
30 % 7 42 855
Entity #9 | Chains: I
Ubiquinol-cytochrome C reductase 8 kDa protein protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 7 6705
95 % 2 7 7250
90 % 2 7 7205
70 % 2 7 6999
50 % 2 7 6454
40 % 2 7 6017
30 % 2 7 5389

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.