Sequence Similarity Clusters for the Entities in PDB 1NT9

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 113 203
95 % 113 113 285
90 % 113 113 299
70 % 113 113 323
50 % 123 123 315
40 % 123 123 343
30 % 123 123 353
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 123 159
95 % 123 123 224
90 % 123 123 235
70 % 133 133 214
50 % 141 141 242
40 % 141 141 268
30 % 141 141 283
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 115 200
95 % 115 115 282
90 % 115 115 295
70 % 115 115 320
50 % 115 115 344
40 % 116 116 364
30 % 116 116 375
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 119 165
95 % 119 119 235
90 % 119 119 245
70 % 119 119 280
50 % 119 119 314
40 % 119 119 342
30 % 119 119 352
Entity #2 | Chains: B
DNA-directed polymerase II SECOND LARGEST SUBUNIT protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 114 201
95 % 115 115 278
90 % 115 115 291
70 % 115 115 317
50 % 125 125 308
40 % 133 133 294
30 % 136 136 302
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 110 207
95 % 110 110 294
90 % 110 110 308
70 % 110 110 330
50 % 111 111 349
40 % 111 111 381
30 % 111 111 387
Entity #4 | Chains: D
YEAST DNA-DIRECTED RNA POLYMERASE II 32 KD POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 59 433
95 % 59 59 638
90 % 59 59 684
70 % 60 60 698
50 % 62 62 749
40 % 62 62 779
30 % 62 62 786
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 124 152
95 % 124 124 214
90 % 124 124 225
70 % 124 124 258
50 % 125 125 294
40 % 134 134 293
30 % 134 134 313
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 118 168
95 % 118 118 240
90 % 118 118 251
70 % 118 118 284
50 % 128 129 280
40 % 128 129 307
30 % 128 129 328
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 62 387
95 % 62 62 571
90 % 62 62 603
70 % 62 62 652
50 % 73 73 561
40 % 73 73 596
30 % 73 73 603
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 123 158
95 % 123 124 218
90 % 123 124 228
70 % 123 124 262
50 % 123 124 305
40 % 123 124 327
30 % 134 135 308
Entity #9 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 114 202
95 % 114 114 284
90 % 114 114 298
70 % 114 114 322
50 % 115 115 340
40 % 115 115 369
30 % 118 118 371

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.