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Complete 12-subunit RNA polymerase II
Sequence Clustering and Redundancy Reduction Results
1NT9
Sequence Clusters for the Sequence Entities in PDB 1NT9
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 108 198
95% 108 108 274
90% 108 108 288
70% 108 108 310
50% 109 109 330
40% 109 109 360
30% 109 109 366
Entity #10: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 114 114 184
95% 114 114 252
90% 114 114 262
70% 115 115 273
50% 123 123 270
40% 123 123 296
30% 123 123 311
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6 KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 110 194
95% 110 110 271
90% 110 110 284
70% 110 110 305
50% 110 110 334
40% 111 111 354
30% 111 111 363
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 113 187
95% 113 113 254
90% 113 113 265
70% 113 113 291
50% 113 113 318
40% 113 113 350
30% 113 113 357
Entity #2: Chains: B - DNA-directed polymerase II SECOND LARGEST SUBUNIT protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 109 195
95% 110 110 267
90% 110 110 280
70% 110 110 302
50% 111 111 321
40% 119 119 308
30% 119 119 319
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 108 200
95% 108 108 277
90% 108 108 291
70% 108 108 311
50% 109 109 331
40% 109 109 364
30% 109 109 368
Entity #4: Chains: D - YEAST DNA-DIRECTED RNA POLYMERASE II 32 KD POLYPEPTIDE protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 55 428
95% 55 55 617
90% 55 55 648
70% 56 56 689
50% 56 56 778
40% 56 56 805
30% 56 56 804
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 115 171
95% 115 115 240
90% 115 115 250
70% 115 115 279
50% 116 116 305
40% 116 116 335
30% 116 116 342
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 112 188
95% 112 112 256
90% 112 112 268
70% 112 112 294
50% 113 114 313
40% 113 114 341
30% 113 114 351
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 57 400
95% 57 57 589
90% 57 57 617
70% 57 57 668
50% 59 59 672
40% 59 59 703
30% 59 59 704
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 114 180
95% 114 115 242
90% 114 115 252
70% 114 115 282
50% 114 115 314
40% 114 115 342
30% 116 117 336
Entity #9: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 109 196
95% 109 109 273
90% 109 109 287
70% 109 109 309
50% 110 110 329
40% 110 110 359
30% 110 110 365
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.