Sequence Similarity Clusters for the Entities in PDB 1NT9

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 114 211
95 % 114 114 299
90 % 114 114 313
70 % 114 114 344
50 % 124 124 346
40 % 124 124 378
30 % 124 124 380
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 131 172
95 % 131 131 236
90 % 131 131 246
70 % 141 141 263
50 % 149 149 257
40 % 149 149 279
30 % 149 149 288
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 116 207
95 % 116 116 294
90 % 116 116 307
70 % 116 116 338
50 % 116 116 397
40 % 117 117 419
30 % 117 117 420
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 127 127 178
95 % 127 127 246
90 % 127 127 254
70 % 127 127 285
50 % 127 127 321
40 % 127 127 346
30 % 127 127 354
Entity #2 | Chains: B
DNA-directed polymerase II SECOND LARGEST SUBUNIT protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 115 208
95 % 116 116 288
90 % 116 116 300
70 % 116 116 334
50 % 126 126 336
40 % 134 134 322
30 % 137 137 327
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 111 111 213
95 % 111 111 307
90 % 111 111 322
70 % 111 111 358
50 % 112 112 411
40 % 112 112 447
30 % 112 112 441
Entity #4 | Chains: D
YEAST DNA-DIRECTED RNA POLYMERASE II 32 KD POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 60 507
95 % 60 60 712
90 % 60 60 742
70 % 61 61 775
50 % 63 63 789
40 % 63 63 816
30 % 63 63 817
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 132 169
95 % 132 132 231
90 % 132 132 242
70 % 132 132 277
50 % 133 133 303
40 % 142 142 302
30 % 142 142 313
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 126 126 179
95 % 126 126 248
90 % 126 126 256
70 % 126 126 288
50 % 136 137 298
40 % 136 137 316
30 % 136 137 330
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 63 467
95 % 63 63 657
90 % 63 63 685
70 % 63 63 732
50 % 74 74 596
40 % 74 74 630
30 % 74 74 635
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 131 171
95 % 131 132 234
90 % 131 132 245
70 % 131 132 278
50 % 131 132 308
40 % 131 132 332
30 % 142 143 311
Entity #9 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 115 209
95 % 115 115 298
90 % 115 115 311
70 % 115 115 343
50 % 116 116 394
40 % 116 116 427
30 % 119 119 415

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.