Sequence Similarity Clusters for the Entities in PDB 1NT9

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 113 206
95 % 113 113 291
90 % 113 113 305
70 % 113 113 329
50 % 123 123 328
40 % 123 123 355
30 % 123 123 363
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 124 176
95 % 124 124 242
90 % 124 124 251
70 % 134 134 256
50 % 142 142 252
40 % 142 142 273
30 % 142 142 290
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 115 203
95 % 115 115 289
90 % 115 115 302
70 % 115 115 326
50 % 115 115 357
40 % 116 116 380
30 % 116 116 383
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 120 183
95 % 120 120 253
90 % 120 120 261
70 % 120 120 298
50 % 120 120 327
40 % 120 120 353
30 % 120 120 360
Entity #2 | Chains: B
DNA-directed polymerase II SECOND LARGEST SUBUNIT protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 114 204
95 % 115 115 286
90 % 115 115 298
70 % 115 115 322
50 % 125 125 323
40 % 133 133 309
30 % 136 136 313
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 110 209
95 % 110 110 301
90 % 110 110 316
70 % 110 110 337
50 % 111 111 364
40 % 111 111 397
30 % 111 111 398
Entity #4 | Chains: D
YEAST DNA-DIRECTED RNA POLYMERASE II 32 KD POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 59 454
95 % 59 59 668
90 % 59 59 713
70 % 60 60 734
50 % 62 62 767
40 % 62 62 803
30 % 62 62 802
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 125 125 171
95 % 125 125 236
90 % 125 125 246
70 % 125 125 277
50 % 126 126 309
40 % 135 135 303
30 % 135 135 321
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 119 188
95 % 119 119 254
90 % 119 119 262
70 % 119 119 299
50 % 129 130 295
40 % 129 130 318
30 % 129 130 332
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 62 405
95 % 62 62 596
90 % 62 62 629
70 % 62 62 672
50 % 73 73 583
40 % 73 73 616
30 % 73 73 628
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 124 175
95 % 124 125 237
90 % 124 125 247
70 % 124 125 279
50 % 124 125 317
40 % 124 125 338
30 % 135 136 316
Entity #9 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 114 205
95 % 114 114 290
90 % 114 114 304
70 % 114 114 328
50 % 115 115 351
40 % 115 115 384
30 % 118 118 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.