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Complete 12-subunit RNA polymerase II
Sequence Clustering and Redundancy Reduction Results
1NT9
Sequence Clusters for the Sequence Entities in PDB 1NT9
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 101 206
95% 101 101 290
90% 101 101 305
70% 101 101 324
50% 102 102 349
40% 102 102 376
30% 102 102 381
Entity #10: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 107 188
95% 107 107 266
90% 107 107 278
70% 108 108 289
50% 116 116 275
40% 116 116 305
30% 116 116 321
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6 KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 103 201
95% 103 103 286
90% 103 103 301
70% 103 103 318
50% 103 103 353
40% 104 104 370
30% 104 104 375
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 106 190
95% 106 106 268
90% 106 106 282
70% 106 106 300
50% 106 106 328
40% 106 106 358
30% 106 106 366
Entity #2: Chains: B - DNA-directed polymerase II SECOND LARGEST SUBUNIT protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 102 203
95% 103 103 283
90% 103 103 297
70% 103 103 316
50% 104 104 340
40% 112 112 319
30% 112 112 330
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 101 207
95% 101 101 291
90% 101 101 306
70% 101 101 325
50% 102 102 351
40% 102 102 379
30% 102 102 385
Entity #4: Chains: D - YEAST DNA-DIRECTED RNA POLYMERASE II 32 KD POLYPEPTIDE protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 51 452
95% 51 51 656
90% 51 51 689
70% 52 52 733
50% 52 52 822
40% 52 52 841
30% 52 52 847
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 108 186
95% 108 108 259
90% 108 108 272
70% 108 108 291
50% 109 109 309
40% 109 109 337
30% 109 109 349
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 105 194
95% 105 105 277
90% 105 105 289
70% 105 105 307
50% 106 107 320
40% 106 107 352
30% 106 107 357
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 53 427
95% 53 53 625
90% 53 53 655
70% 53 53 705
50% 55 55 701
40% 55 55 729
30% 55 55 730
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 107 187
95% 107 108 260
90% 107 108 273
70% 107 108 292
50% 107 108 321
40% 107 108 353
30% 109 110 347
Entity #9: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 102 205
95% 102 102 289
90% 102 102 304
70% 102 102 323
50% 103 103 347
40% 103 103 374
30% 103 103 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.