Sequence Similarity Clusters for the Entities in PDB 1NT9

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 113 205
95 % 113 113 287
90 % 113 113 301
70 % 113 113 324
50 % 123 123 322
40 % 123 123 349
30 % 123 123 358
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 123 174
95 % 123 123 244
90 % 123 123 254
70 % 133 133 242
50 % 141 141 247
40 % 141 141 271
30 % 141 141 286
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 115 201
95 % 115 115 284
90 % 115 115 297
70 % 115 115 322
50 % 115 115 348
40 % 116 116 367
30 % 116 116 377
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 119 184
95 % 119 119 251
90 % 119 119 260
70 % 119 119 296
50 % 119 119 321
40 % 119 119 348
30 % 119 119 357
Entity #2 | Chains: B
DNA-directed polymerase II SECOND LARGEST SUBUNIT protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 114 202
95 % 115 115 280
90 % 115 115 293
70 % 115 115 318
50 % 125 125 315
40 % 133 133 298
30 % 136 136 304
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 110 209
95 % 110 110 295
90 % 110 110 310
70 % 110 110 331
50 % 111 111 354
40 % 111 111 385
30 % 111 111 391
Entity #4 | Chains: D
YEAST DNA-DIRECTED RNA POLYMERASE II 32 KD POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 59 436
95 % 59 59 644
90 % 59 59 688
70 % 60 60 700
50 % 62 62 753
40 % 62 62 784
30 % 62 62 792
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 124 168
95 % 124 124 235
90 % 124 124 246
70 % 124 124 276
50 % 125 125 303
40 % 134 134 296
30 % 134 134 317
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 118 187
95 % 118 118 256
90 % 118 118 266
70 % 118 118 300
50 % 128 129 290
40 % 128 129 314
30 % 128 129 331
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 62 392
95 % 62 62 577
90 % 62 62 607
70 % 62 62 654
50 % 73 73 573
40 % 73 73 605
30 % 73 73 615
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 123 172
95 % 123 124 239
90 % 123 124 249
70 % 123 124 280
50 % 123 124 313
40 % 123 124 333
30 % 134 135 310
Entity #9 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 114 204
95 % 114 114 286
90 % 114 114 300
70 % 114 114 323
50 % 115 115 342
40 % 115 115 371
30 % 118 118 374

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.