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Complete 12-subunit RNA polymerase II
Sequence Clustering and Redundancy Reduction Results
1NT9
Sequence Clusters for the Sequence Entities in PDB 1NT9
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 96 203
95% 96 96 287
90% 96 96 302
70% 96 96 319
50% 97 97 343
40% 97 97 365
30% 97 97 379
Entity #10: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 102 184
95% 102 102 262
90% 102 102 274
70% 103 103 282
50% 112 112 267
40% 112 112 293
30% 112 112 309
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6 KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 98 200
95% 98 98 283
90% 98 98 298
70% 98 98 314
50% 98 98 352
40% 99 99 361
30% 99 99 372
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 101 188
95% 101 101 269
90% 101 101 281
70% 101 101 298
50% 101 101 331
40% 101 101 354
30% 101 101 365
Entity #2: Chains: B - DNA-directed polymerase II SECOND LARGEST SUBUNIT protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 97 201
95% 98 98 280
90% 98 98 295
70% 98 98 312
50% 99 99 336
40% 108 108 300
30% 108 108 317
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 96 205
95% 96 96 288
90% 96 96 303
70% 96 96 320
50% 97 97 346
40% 97 97 367
30% 97 97 381
Entity #4: Chains: D - YEAST DNA-DIRECTED RNA POLYMERASE II 32 KD POLYPEPTIDE protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 49 447
95% 49 49 646
90% 49 49 679
70% 50 50 704
50% 50 50 762
40% 50 50 774
30% 50 50 780
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 103 179
95% 103 103 252
90% 103 103 264
70% 103 103 289
50% 104 104 304
40% 104 104 330
30% 104 104 341
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 100 190
95% 100 100 273
90% 100 100 285
70% 100 100 304
50% 101 102 319
40% 101 102 341
30% 101 102 353
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 51 417
95% 51 51 608
90% 51 51 639
70% 51 51 671
50% 53 53 641
40% 53 53 670
30% 53 53 674
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 102 183
95% 102 103 253
90% 102 103 266
70% 102 103 290
50% 102 103 320
40% 102 103 342
30% 104 105 337
Entity #9: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 97 202
95% 97 97 286
90% 97 97 301
70% 97 97 318
50% 98 98 341
40% 98 98 363
30% 98 98 376
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.