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Complete 12-subunit RNA polymerase II
Sequence Clustering and Redundancy Reduction Results
1NT9
Sequence Clusters for the Sequence Entities in PDB 1NT9
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 103 205
95% 103 103 288
90% 103 103 301
70% 103 103 323
50% 104 104 347
40% 104 104 378
30% 104 104 381
Entity #10: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 109 189
95% 109 109 263
90% 109 109 276
70% 110 110 290
50% 118 118 274
40% 118 118 310
30% 118 118 320
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6 KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 105 201
95% 105 105 286
90% 105 105 296
70% 105 105 319
50% 105 105 350
40% 106 106 368
30% 106 106 374
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 108 191
95% 108 108 266
90% 108 108 280
70% 108 108 300
50% 108 108 328
40% 108 108 362
30% 108 108 365
Entity #2: Chains: B - DNA-directed polymerase II SECOND LARGEST SUBUNIT protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 104 202
95% 105 105 284
90% 105 105 295
70% 105 105 318
50% 106 106 334
40% 114 114 320
30% 114 114 329
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 103 206
95% 103 103 289
90% 103 103 302
70% 103 103 324
50% 104 104 349
40% 104 104 380
30% 104 104 384
Entity #4: Chains: D - YEAST DNA-DIRECTED RNA POLYMERASE II 32 KD POLYPEPTIDE protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 51 464
95% 51 51 673
90% 51 51 708
70% 52 52 753
50% 52 52 843
40% 52 52 864
30% 52 52 864
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 110 184
95% 110 110 256
90% 110 110 268
70% 110 110 292
50% 111 111 310
40% 111 111 344
30% 111 111 353
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 107 192
95% 107 107 272
90% 107 107 285
70% 107 107 305
50% 108 109 317
40% 108 109 349
30% 108 109 358
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 53 437
95% 53 53 638
90% 53 53 670
70% 53 53 721
50% 55 55 712
40% 55 55 740
30% 55 55 741
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 109 188
95% 109 110 257
90% 109 110 269
70% 109 110 293
50% 109 110 318
40% 109 110 350
30% 111 112 350
Entity #9: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 104 204
95% 104 104 287
90% 104 104 300
70% 104 104 322
50% 105 105 343
40% 105 105 375
30% 105 105 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.