Sequence Similarity Clusters for the Entities in PDB 1NT9

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 109 206
95 % 109 109 294
90 % 109 109 306
70 % 109 109 328
50 % 111 111 338
40 % 111 111 373
30 % 111 111 377
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 119 163
95 % 119 119 232
90 % 119 119 242
70 % 121 121 266
50 % 129 129 265
40 % 129 129 289
30 % 129 129 305
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 111 111 201
95 % 111 111 290
90 % 111 111 302
70 % 111 111 323
50 % 111 111 348
40 % 112 112 372
30 % 112 112 375
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 117 178
95 % 117 117 251
90 % 117 117 260
70 % 117 117 292
50 % 117 117 319
40 % 117 117 346
30 % 117 117 353
Entity #2 | Chains: B
DNA-directed polymerase II SECOND LARGEST SUBUNIT protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 110 203
95 % 111 111 287
90 % 111 111 300
70 % 111 111 321
50 % 113 113 335
40 % 121 121 321
30 % 124 124 328
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 108 208
95 % 108 108 296
90 % 108 108 310
70 % 108 108 331
50 % 109 109 350
40 % 109 109 381
30 % 109 109 383
Entity #4 | Chains: D
YEAST DNA-DIRECTED RNA POLYMERASE II 32 KD POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 55 466
95 % 55 55 667
90 % 55 55 700
70 % 56 56 737
50 % 58 58 794
40 % 58 58 821
30 % 58 58 814
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 120 159
95 % 120 120 225
90 % 120 120 236
70 % 120 120 271
50 % 121 121 302
40 % 122 122 320
30 % 122 122 335
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 116 182
95 % 116 116 254
90 % 116 116 263
70 % 116 116 296
50 % 118 119 307
40 % 118 119 333
30 % 118 119 342
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 58 406
95 % 58 58 604
90 % 58 58 641
70 % 58 58 684
50 % 61 61 691
40 % 61 61 725
30 % 61 61 729
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 119 161
95 % 119 120 227
90 % 119 120 238
70 % 119 120 273
50 % 119 120 308
40 % 119 120 334
30 % 122 123 332
Entity #9 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 110 205
95 % 110 110 293
90 % 110 110 305
70 % 110 110 327
50 % 111 111 341
40 % 111 111 376
30 % 114 114 370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.