Sequence Similarity Clusters for the Entities in PDB 1NT9

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 113 203
95 % 113 113 285
90 % 113 113 299
70 % 113 113 321
50 % 123 123 314
40 % 123 123 342
30 % 123 123 351
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 123 159
95 % 123 123 222
90 % 123 123 234
70 % 133 133 214
50 % 141 141 241
40 % 141 141 267
30 % 141 141 283
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 115 199
95 % 115 115 280
90 % 115 115 293
70 % 115 115 318
50 % 115 115 343
40 % 116 116 361
30 % 116 116 372
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 119 164
95 % 119 119 234
90 % 119 119 244
70 % 119 119 278
50 % 119 119 313
40 % 119 119 341
30 % 119 119 350
Entity #2 | Chains: B
DNA-directed polymerase II SECOND LARGEST SUBUNIT protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 114 200
95 % 115 115 277
90 % 115 115 290
70 % 115 115 316
50 % 125 125 308
40 % 133 133 292
30 % 136 136 300
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 110 207
95 % 110 110 294
90 % 110 110 308
70 % 110 110 329
50 % 111 111 346
40 % 111 111 379
30 % 111 111 384
Entity #4 | Chains: D
YEAST DNA-DIRECTED RNA POLYMERASE II 32 KD POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 59 412
95 % 59 59 610
90 % 59 59 647
70 % 60 60 678
50 % 62 62 745
40 % 62 62 773
30 % 62 62 781
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 124 152
95 % 124 124 212
90 % 124 124 224
70 % 124 124 257
50 % 125 125 293
40 % 134 134 291
30 % 134 134 311
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 118 166
95 % 118 118 239
90 % 118 118 250
70 % 118 118 282
50 % 128 129 278
40 % 128 129 305
30 % 128 129 326
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 62 381
95 % 62 62 561
90 % 62 62 591
70 % 62 62 638
50 % 73 73 550
40 % 73 73 585
30 % 73 73 592
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 123 158
95 % 123 124 216
90 % 123 124 227
70 % 123 124 261
50 % 123 124 304
40 % 123 124 326
30 % 134 135 306
Entity #9 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 114 202
95 % 114 114 284
90 % 114 114 298
70 % 114 114 320
50 % 115 115 339
40 % 115 115 365
30 % 118 118 367

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.