Sequence Similarity Clusters for the Entities in PDB 1NSN

Entity #1 | Chains: L
IGG FAB (IGG1, KAPPA) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60449
95 % 2 4 6398 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.8
PDBFlex
90 % 46 101 155
70 % 1434 2346 1
50 % 2915 4752 1
40 % 2915 4752 1
30 % 3386 5606 1
Entity #2 | Chains: H
IGG FAB (IGG1, KAPPA) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61307
95 % 1 1 42853
90 % 11 17 2884
70 % 1408 2299 2
50 % 2916 4752 1
40 % 2916 4752 1
30 % 3387 5606 1
Entity #3 | Chains: S
STAPHYLOCOCCAL NUCLEASE protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65138
95 % 120 129 284 Flexibility: Low
Max RMSD: 10.4, Avg RMSD: 0.8
PDBFlex
90 % 283 292 90
70 % 283 292 107
50 % 283 292 145
40 % 283 292 159
30 % 283 292 172

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.