Sequence Similarity Clusters for the Entities in PDB 1NSN

Entity #1 | Chains: L
IGG FAB (IGG1, KAPPA) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58990
95 % 2 4 6236 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.7
PDBFlex
90 % 44 98 151
70 % 1381 2264 1
50 % 2809 4587 1
40 % 2809 4587 1
30 % 3254 5394 1
Entity #2 | Chains: H
IGG FAB (IGG1, KAPPA) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59816
95 % 1 1 41797
90 % 11 17 2798
70 % 1359 2222 2
50 % 2810 4587 1
40 % 2810 4587 1
30 % 3255 5394 1
Entity #3 | Chains: S
STAPHYLOCOCCAL NUCLEASE protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63522
95 % 120 129 274 Flexibility: Low
Max RMSD: 10.4, Avg RMSD: 0.7
PDBFlex
90 % 282 291 81
70 % 282 291 99
50 % 282 291 135
40 % 282 291 152
30 % 282 291 167

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.