Sequence Similarity Clusters for the Entities in PDB 1NSN

Entity #1 | Chains: L
IGG FAB (IGG1, KAPPA) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68105
95 % 2 4 7149 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 52 110 158
70 % 1360 2236 2
50 % 1701 2821 2
40 % 1701 2821 2
30 % 3455 5715 1
Entity #2 | Chains: H
IGG FAB (IGG1, KAPPA) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68107
95 % 1 1 49147
90 % 10 16 3826
70 % 1650 2735 1
50 % 1732 2852 1
40 % 1732 2852 1
30 % 3456 5715 1
Entity #3 | Chains: S
STAPHYLOCOCCAL NUCLEASE protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68106
95 % 120 129 321 Flexibility: Low
Max RMSD: 17.1, Avg RMSD: 1.1
PDBFlex
90 % 285 294 127
70 % 285 294 138
50 % 285 294 161
40 % 285 294 173
30 % 285 294 181

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures