Sequence Similarity Clusters for the Entities in PDB 1NSN

Entity #1 | Chains: L
IGG FAB (IGG1, KAPPA) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 16265
95 % 1 2 15109 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.7
PDBFlex
90 % 50 109 148
70 % 1559 2553 1
50 % 3175 5180 1
40 % 3612 5834 1
30 % 4472 7269 1
Entity #2 | Chains: H
IGG FAB (IGG1, KAPPA) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55588
95 % 1 1 45644
90 % 11 19 2551
70 % 1533 2511 2
50 % 3176 5180 1
40 % 3613 5834 1
30 % 4473 7269 1
Entity #3 | Chains: S
STAPHYLOCOCCAL NUCLEASE protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 69 566
95 % 283 292 112 Flexibility: Low
Max RMSD: 10.4, Avg RMSD: 0.9
PDBFlex
90 % 283 292 116
70 % 283 292 130
50 % 283 292 160
40 % 283 292 173
30 % 283 292 192

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures