Sequence Similarity Clusters for the Entities in PDB 1NSN

Entity #1 | Chains: L
IGG FAB (IGG1, KAPPA) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61449
95 % 2 4 6501 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.8
PDBFlex
90 % 48 103 153
70 % 1490 2426 1
50 % 3027 4913 1
40 % 3027 4913 1
30 % 3508 5780 1
Entity #2 | Chains: H
IGG FAB (IGG1, KAPPA) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62328
95 % 1 1 43517
90 % 11 18 2644
70 % 1461 2376 2
50 % 3028 4913 1
40 % 3028 4913 1
30 % 3509 5780 1
Entity #3 | Chains: S
STAPHYLOCOCCAL NUCLEASE protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66211
95 % 120 129 294 Flexibility: Low
Max RMSD: 10.4, Avg RMSD: 0.8
PDBFlex
90 % 283 292 94
70 % 283 292 111
50 % 283 292 150
40 % 283 292 162
30 % 283 292 174

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures