Sequence Similarity Clusters for the Entities in PDB 1NSN

Entity #1 | Chains: L
IGG FAB (IGG1, KAPPA) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62165
95 % 2 4 6589 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.8
PDBFlex
90 % 49 105 152
70 % 1521 2474 1
50 % 3090 5011 1
40 % 3090 5011 1
30 % 3625 5941 1
Entity #2 | Chains: H
IGG FAB (IGG1, KAPPA) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63056
95 % 1 1 44007
90 % 11 18 2676
70 % 1492 2424 2
50 % 3091 5011 1
40 % 3091 5011 1
30 % 3626 5941 1
Entity #3 | Chains: S
STAPHYLOCOCCAL NUCLEASE protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66974
95 % 120 129 296 Flexibility: Low
Max RMSD: 10.4, Avg RMSD: 0.8
PDBFlex
90 % 283 292 113
70 % 283 292 127
50 % 283 292 155
40 % 283 292 167
30 % 283 292 177

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures