Sequence Similarity Clusters for the Entities in PDB 1NSN

Entity #1 | Chains: L
IGG FAB (IGG1, KAPPA) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59767
95 % 2 4 6311 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.8
PDBFlex
90 % 45 99 152
70 % 1393 2287 1
50 % 2832 4633 1
40 % 2832 4633 1
30 % 3288 5461 1
Entity #2 | Chains: H
IGG FAB (IGG1, KAPPA) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60603
95 % 1 1 42358
90 % 11 17 2835
70 % 1370 2244 2
50 % 2833 4633 1
40 % 2833 4633 1
30 % 3289 5461 1
Entity #3 | Chains: S
STAPHYLOCOCCAL NUCLEASE protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64398
95 % 120 129 277 Flexibility: Low
Max RMSD: 10.4, Avg RMSD: 0.7
PDBFlex
90 % 283 292 84
70 % 283 292 102
50 % 283 292 140
40 % 283 292 155
30 % 283 292 171

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.