Sequence Similarity Clusters for the Entities in PDB 1NRQ

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 328 335 45
95 % 329 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 329 336 65
70 % 331 338 76
50 % 331 338 100
40 % 331 338 124
30 % 331 338 135
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 284 290 55
95 % 367 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 373 381 38
70 % 396 405 43
50 % 396 405 78
40 % 1656 1682 4
30 % 1800 1831 6
Entity #3 | Chains: R
RECEPTOR BASED PEPTIDE D-FPR'S protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 29528
95 % 3 3 24478
90 % 3 3 23682
70 % 3 3 21639
50 % 3 3 18778
40 % 3 3 16733
30 % 3 3 14371

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.