Sequence Similarity Clusters for the Entities in PDB 1NRQ

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 328 335 45
95 % 329 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 329 336 66
70 % 331 338 78
50 % 331 338 107
40 % 331 338 131
30 % 331 338 136
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 284 290 57
95 % 367 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 373 381 39
70 % 396 405 46
50 % 396 405 84
40 % 1672 1698 4
30 % 1817 1848 6
Entity #3 | Chains: R
RECEPTOR BASED PEPTIDE D-FPR'S protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 30446
95 % 3 3 25263
90 % 3 3 24414
70 % 3 3 22186
50 % 3 3 19210
40 % 3 3 17112
30 % 3 3 14695

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures