Sequence Similarity Clusters for the Entities in PDB 1NRQ

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 328 334 52
95 % 335 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 335 342 67
70 % 335 342 79
50 % 335 342 111
40 % 335 342 134
30 % 335 342 147
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 325 332 53
95 % 371 378 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 377 385 56
70 % 400 409 47
50 % 400 409 85
40 % 1838 1873 4
30 % 1851 1887 7
Entity #3 | Chains: R
RECEPTOR BASED PEPTIDE D-FPR'S protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25564
95 % 3 3 22555
90 % 3 3 21845
70 % 3 3 19953
50 % 3 3 17215
40 % 3 3 15223
30 % 3 3 12750

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures