Sequence Similarity Clusters for the Entities in PDB 1NRP

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 319 335 45
95 % 320 336 60
90 % 320 336 65
70 % 321 338 76
50 % 321 338 101
40 % 321 338 125
30 % 321 338 137
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 278 290 55
95 % 356 374 35
90 % 361 381 38
70 % 379 405 44
50 % 379 405 78
40 % 1605 1684 4
30 % 1740 1833 6
Entity #3 | Chains: R
RECEPTOR BASED PEPTIDE NR'S protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 29851
95 % 2 3 24766
90 % 2 3 23958
70 % 2 3 21828
50 % 2 3 18919
40 % 2 3 16855
30 % 2 3 14469

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.