Sequence Similarity Clusters for the Entities in PDB 1NRP

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 322 338 45
95 % 323 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 323 339 67
70 % 324 341 78
50 % 324 341 109
40 % 324 341 132
30 % 324 341 140
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 278 290 75
95 % 359 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 364 384 48
70 % 382 408 46
50 % 382 408 84
40 % 1771 1863 4
30 % 1787 1885 6
Entity #3 | Chains: R
RECEPTOR BASED PEPTIDE NR'S protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 31320
95 % 2 3 25936
90 % 2 3 25051
70 % 2 3 22740
50 % 2 3 19665
40 % 2 3 17501
30 % 2 3 15026

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures