Sequence Similarity Clusters for the Entities in PDB 1NRP

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 319 335 45
95 % 320 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 320 336 66
70 % 321 338 77
50 % 321 338 102
40 % 321 338 126
30 % 321 338 137
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 278 290 55
95 % 356 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 361 381 39
70 % 379 405 45
50 % 379 405 81
40 % 1616 1695 4
30 % 1752 1845 6
Entity #3 | Chains: R
RECEPTOR BASED PEPTIDE NR'S protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 30275
95 % 2 3 25107
90 % 2 3 24277
70 % 2 3 22082
50 % 2 3 19119
40 % 2 3 17033
30 % 2 3 14629

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.