Sequence Similarity Clusters for the Entities in PDB 1NRP

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 319 334 52
95 % 325 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 325 342 67
70 % 325 342 80
50 % 325 342 111
40 % 325 342 135
30 % 325 342 145
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 318 332 53
95 % 360 378 52 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 365 385 56
70 % 383 409 47
50 % 383 409 85
40 % 1789 1884 4
30 % 1800 1898 7
Entity #3 | Chains: R
RECEPTOR BASED PEPTIDE NR'S protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 25672
95 % 2 3 22643
90 % 2 3 21922
70 % 2 3 20032
50 % 2 3 17282
40 % 2 3 15275
30 % 2 3 12794

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures