Sequence Similarity Clusters for the Entities in PDB 1NRP

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 319 335 44
95 % 320 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 320 336 65
70 % 321 338 76
50 % 321 338 99
40 % 321 338 122
30 % 321 338 134
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 278 290 55
95 % 356 374 35
90 % 361 381 38
70 % 379 405 44
50 % 379 405 78
40 % 1602 1681 4
30 % 1737 1830 6
Entity #3 | Chains: R
RECEPTOR BASED PEPTIDE NR'S protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 29355
95 % 2 3 24344
90 % 2 3 23554
70 % 2 3 21524
50 % 2 3 18689
40 % 2 3 16654
30 % 2 3 14303

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.