Sequence Similarity Clusters for the Entities in PDB 1NRO

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 313 334 52
95 % 319 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 319 342 67
70 % 319 342 79
50 % 319 342 111
40 % 319 342 134
30 % 319 342 147
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 312 332 53
95 % 353 378 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 358 385 56
70 % 375 409 47
50 % 375 409 85
40 % 1733 1873 4
30 % 1744 1887 7
Entity #3 | Chains: R
RECEPTOR BASED PEPTIDE NRP protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51878
95 % 1 1 42805
90 % 1 1 40755
70 % 1 1 33162
50 % 1 1 28176
40 % 1 1 24713
30 % 1 1 20588

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures