Sequence Similarity Clusters for the Entities in PDB 1NRO

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 313 335 45
95 % 314 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 314 336 65
70 % 315 338 77
50 % 315 338 102
40 % 315 338 125
30 % 315 338 137
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 272 290 55
95 % 349 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 354 381 38
70 % 371 405 45
50 % 371 405 80
40 % 1565 1685 4
30 % 1696 1834 6
Entity #3 | Chains: R
RECEPTOR BASED PEPTIDE NRP protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74140
95 % 1 1 51764
90 % 1 1 49135
70 % 1 1 43031
50 % 1 1 36715
40 % 1 1 32385
30 % 1 1 27480

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.