Sequence Similarity Clusters for the Entities in PDB 1NRO

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 313 335 45
95 % 314 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 314 336 66
70 % 315 338 78
50 % 315 338 107
40 % 315 338 131
30 % 315 338 136
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 272 290 57
95 % 349 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 354 381 39
70 % 371 405 46
50 % 371 405 84
40 % 1578 1698 4
30 % 1710 1848 6
Entity #3 | Chains: R
RECEPTOR BASED PEPTIDE NRP protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75035
95 % 1 1 52368
90 % 1 1 49664
70 % 1 1 43453
50 % 1 1 37069
40 % 1 1 32688
30 % 1 1 27740

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures