Sequence Similarity Clusters for the Entities in PDB 1NRO

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 311 333 44
95 % 312 334 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 312 334 64
70 % 313 336 77
50 % 313 336 100
40 % 313 336 123
30 % 313 336 134
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 270 288 55
95 % 347 372 36 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 352 379 38
70 % 369 403 45
50 % 369 403 77
40 % 1549 1669 4
30 % 1675 1811 6
Entity #3 | Chains: R
RECEPTOR BASED PEPTIDE NRP protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72110
95 % 1 1 50272
90 % 1 1 47756
70 % 1 1 41945
50 % 1 1 35887
40 % 1 1 31675
30 % 1 1 26866

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.