Sequence Similarity Clusters for the Entities in PDB 1NRN

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 317 335 45
95 % 318 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 318 336 65
70 % 319 338 76
50 % 319 338 101
40 % 319 338 125
30 % 319 338 136
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 276 290 55
95 % 353 374 35
90 % 358 381 38
70 % 376 405 43
50 % 376 405 78
40 % 1578 1682 4
30 % 1713 1831 6
Entity #3 | Chains: R
RECEPTOR BASED PEPTIDE NRS protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29576
95 % 1 3 24523
90 % 1 3 23725
70 % 1 3 21676
50 % 1 3 18807
40 % 1 3 16761
30 % 1 3 14396

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.