Sequence Similarity Clusters for the Entities in PDB 1NRL

Entity #1 | Chains: A,B
Orphan nuclear receptor PXR protein, length: 316 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 2007
95 % 3 20 1911 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 3 20 1959
70 % 3 20 1973
50 % 3 20 1985
40 % 3 20 1987
30 % 4 47 994
Entity #2 | Chains: C,D
Nuclear Receptor Coactivator 1 isoform 3 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 18 1177
95 % 6 18 1598
90 % 6 18 1635
70 % 6 18 1651
50 % 6 18 1686
40 % 6 18 1694
30 % 6 18 1657

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.