Sequence Similarity Clusters for the Entities in PDB 1NQJ

Entity #1 | Chains: A,B
class 1 collagenase protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 10256
95 % 1 5 9990 Flexibility: Low
Max RMSD: 7.3, Avg RMSD: 1.8
PDBFlex
90 % 1 5 9870
70 % 1 5 9397
50 % 1 5 8528
40 % 1 5 7767
30 % 1 5 6086

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures