Sequence Similarity Clusters for the Entities in PDB 1NQJ

Entity #1 | Chains: A,B
class 1 collagenase protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 10061
95 % 1 5 10102 Flexibility: Low
Max RMSD: 7.3, Avg RMSD: 1.9
PDBFlex
90 % 1 5 9980
70 % 1 5 9493
50 % 1 5 8587
40 % 2 6 6799
30 % 2 6 6062

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures