Sequence Similarity Clusters for the Entities in PDB 1NQI

Entity #1 | Chains: A,C
ALPHA-LACTALBUMIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 1934
95 % 7 12 2506 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 7 12 2558
70 % 7 12 2542
50 % 17 28 902
40 % 792 971 11
30 % 792 971 19
Entity #2 | Chains: B,D
BETA-1,4-GALACTOSYLTRANSFERASE protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 3189
95 % 8 20 1326 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 17 37 549
70 % 17 37 592
50 % 17 37 631
40 % 19 41 630
30 % 19 41 625

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.