Sequence Similarity Clusters for the Entities in PDB 1NQD

Entity #1 | Chains: A,B
class 1 collagenase protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 9381
95 % 5 5 9469 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 5 5 9365
70 % 5 5 8918
50 % 5 5 8066
40 % 6 6 6364
30 % 6 6 5675

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.