Sequence Similarity Clusters for the Entities in PDB 1NQA

Entity #1 | Chains: O,P,Q,R
Glyceraldehyde 3-phosphate dehydrogenase protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 8592
95 % 5 11 1204 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 5 11 1231
70 % 5 11 1257
50 % 44 139 74
40 % 44 139 95
30 % 44 139 107

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures