Sequence Similarity Clusters for the Entities in PDB 1NPY

Entity #1 | Chains: A,B,C,D
Hypothetical shikimate 5-dehydrogenase-like protein HI0607 protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20321
95 % 1 1 18401 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 1 17919
70 % 1 1 16550
50 % 1 1 14440
40 % 1 1 12883
30 % 18 49 534

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures