Sequence Similarity Clusters for the Entities in PDB 1NPP

Entity #1 | Chains: A,B,C,D
Transcription antitermination protein nusG protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 6620
95 % 3 4 7240 Flexibility: Medium
Max RMSD: 16.5, Avg RMSD: 6.0
PDBFlex
90 % 3 4 7220
70 % 3 4 7025
50 % 3 4 6506
40 % 3 4 6068
30 % 3 4 5435

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures