Sequence Similarity Clusters for the Entities in PDB 1NPO

Entity #1 | Chains: A
NEUROPHYSIN II protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10048
95 % 3 5 8214 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 3 5 8161
70 % 3 9 4945
50 % 3 9 4730
40 % 3 9 4493
30 % 3 9 4121
Entity #2 | Chains: B,D
OXYTOCIN protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
NEUROPHYSIN II protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71527
95 % 4 5 8214 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 4 5 8161
70 % 4 9 4945
50 % 4 9 4730
40 % 4 9 4493
30 % 4 9 4121

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures