Sequence Similarity Clusters for the Entities in PDB 1NPE

Entity #1 | Chains: A
nidogen protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57179
95 % 1 1 46841
90 % 1 1 44511
70 % 1 1 39144
50 % 1 1 33207
40 % 1 1 29098
30 % 1 1 24296
Entity #2 | Chains: B
Laminin gamma-1 chain protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 42255
95 % 2 2 35468
90 % 2 2 33887
70 % 2 2 30193
50 % 2 2 25739
40 % 2 2 20464
30 % 2 2 17082

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures