Sequence Similarity Clusters for the Entities in PDB 1NPE

Entity #1 | Chains: A
nidogen protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55450
95 % 1 1 39427
90 % 1 1 37710
70 % 1 1 33555
50 % 1 1 28687
40 % 1 1 25324
30 % 1 1 21481
Entity #2 | Chains: B
Laminin gamma-1 chain protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41777
95 % 2 2 31599 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.9
PDBFlex
90 % 2 2 30252
70 % 2 2 27069
50 % 2 2 23141
40 % 2 2 20353
30 % 2 2 17228

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.