Sequence Similarity Clusters for the Entities in PDB 1NPE

Entity #1 | Chains: A
nidogen protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58071
95 % 1 1 41293
90 % 1 1 39430
70 % 1 1 34977
50 % 1 1 29860
40 % 1 1 26344
30 % 1 1 22362
Entity #2 | Chains: B
Laminin gamma-1 chain protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 43843
95 % 2 2 33127
90 % 2 2 31663
70 % 2 2 28228
50 % 2 2 24082
40 % 2 2 21181
30 % 2 2 17938

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures