Sequence Similarity Clusters for the Entities in PDB 1NPD

Entity #1 | Chains: A,B
HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE PROTEIN YDIB protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19113
95 % 2 3 11622 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 3 4 8594
70 % 3 4 8251
50 % 5 6 2987
40 % 5 6 2925
30 % 40 49 485

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.