Sequence Similarity Clusters for the Entities in PDB 1NP0

Entity #1 | Chains: A,B
Beta-hexosaminidase subunit beta protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14096
95 % 1 2 13358 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 13154
70 % 1 2 12380
50 % 1 2 11046
40 % 1 2 10023
30 % 1 2 8733
Entity #2 | Chains: C,E
Beta-hexosaminidase subunit beta chain B protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13028
95 % 1 2 12488 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 2 12286
70 % 1 2 11580
50 % 1 2 10334
40 % 1 2 9370
30 % 1 2 8164
Entity #3 | Chains: D,F
Beta-hexosaminidase subunit beta chain A protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12572
95 % 1 2 12147 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 2 11986
70 % 1 2 11327
50 % 1 2 10127
40 % 1 2 9188
30 % 1 2 8011

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.