Sequence Similarity Clusters for the Entities in PDB 1NP0

Entity #1 | Chains: A,B
Beta-hexosaminidase subunit beta protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13927
95 % 1 2 13187 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 1 2 12981
70 % 1 2 12181
50 % 1 2 10871
40 % 1 2 9868
30 % 1 2 8595
Entity #2 | Chains: C,E
Beta-hexosaminidase subunit beta chain B protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 12871
95 % 1 2 12326
90 % 1 2 12124
70 % 1 2 11393
50 % 1 2 10173
40 % 1 2 9223
30 % 1 2 8034
Entity #3 | Chains: D,F
Beta-hexosaminidase subunit beta chain A protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 12425
95 % 1 2 11993
90 % 1 2 11826
70 % 1 2 11146
50 % 1 2 9971
40 % 1 2 9048
30 % 1 2 7887

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.