Sequence Similarity Clusters for the Entities in PDB 1NP0

Entity #1 | Chains: A,B
Beta-hexosaminidase subunit beta protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12303
95 % 1 2 11810 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 11644
70 % 1 2 11010
50 % 1 2 9870
40 % 1 2 8917
30 % 1 2 7687
Entity #2 | Chains: C,E
Beta-hexosaminidase subunit beta chain B protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13271
95 % 1 2 12561 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 2 12368
70 % 1 2 11666
50 % 1 2 10418
40 % 1 2 9415
30 % 1 2 8077
Entity #3 | Chains: D,F
Beta-hexosaminidase subunit beta chain A protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13272
95 % 1 2 12562 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 2 12369
70 % 1 2 11667
50 % 1 2 10419
40 % 1 2 9416
30 % 1 2 8078

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures