Sequence Similarity Clusters for the Entities in PDB 1NP0

Entity #1 | Chains: A,B
Beta-hexosaminidase subunit beta protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14308
95 % 1 2 13543 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 13330
70 % 1 2 12534
50 % 1 2 11177
40 % 1 2 10140
30 % 1 2 8841
Entity #2 | Chains: C,E
Beta-hexosaminidase subunit beta chain B protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13228
95 % 1 2 12663 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 2 12454
70 % 1 2 11729
50 % 1 2 10463
40 % 1 2 9484
30 % 1 2 8271
Entity #3 | Chains: D,F
Beta-hexosaminidase subunit beta chain A protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12765
95 % 1 2 12316 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 2 12142
70 % 1 2 11466
50 % 1 2 10251
40 % 1 2 9298
30 % 1 2 8113

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures