Sequence Similarity Clusters for the Entities in PDB 1NOV

Entity #1 | Chains: A,B,C
NODAMURA VIRUS COAT PROTEINS protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 25822
95 % 1 1 21813 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 1 1 21198
70 % 1 1 19469
50 % 1 1 16908
40 % 4 5 3938
30 % 5 6 3053
Entity #2 | Chains: D,E,F
NODAMURA VIRUS COAT PROTEINS protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29897
95 % 1 1 24803
90 % 1 1 23991
70 % 1 1 21836
50 % 1 1 18916
40 % 1 1 16844
30 % 1 1 14450

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.