Sequence Similarity Clusters for the Entities in PDB 1NOV

Entity #1 | Chains: A,B,C
NODAMURA VIRUS COAT PROTEINS protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 25368
95 % 1 1 21401 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 1 1 20805
70 % 1 1 19162
50 % 1 1 16657
40 % 4 5 3880
30 % 5 6 3003
Entity #2 | Chains: D,E,F
NODAMURA VIRUS COAT PROTEINS protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29355
95 % 1 1 24328
90 % 1 1 23543
70 % 1 1 21519
50 % 1 1 18673
40 % 1 1 16632
30 % 1 1 14270

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.