Sequence Similarity Clusters for the Entities in PDB 1NOV

Entity #1 | Chains: A,B,C
NODAMURA VIRUS COAT PROTEINS protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27019
95 % 1 1 22756 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 1 22088
70 % 1 1 20258
50 % 1 1 17556
40 % 4 5 4093
30 % 5 6 3185
Entity #2 | Chains: D,E,F
NODAMURA VIRUS COAT PROTEINS protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31193
95 % 1 1 25822
90 % 1 1 24950
70 % 1 1 22649
50 % 1 1 19582
40 % 1 1 17421
30 % 1 1 14939

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures