Sequence Similarity Clusters for the Entities in PDB 1NOV

Entity #1 | Chains: A,B,C
NODAMURA VIRUS COAT PROTEINS protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30030
95 % 1 1 26324 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 1 1 25397
70 % 1 1 23004
50 % 4 5 4526
40 % 5 6 3478
30 % 5 6 3253
Entity #2 | Chains: D,E,F
NODAMURA VIRUS COAT PROTEINS protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 30210
95 % 1 1 26325
90 % 1 1 25398
70 % 1 1 23005
50 % 1 1 19749
40 % 1 1 17437
30 % 1 1 14615

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures