Sequence Similarity Clusters for the Entities in PDB 1NOV

Entity #1 | Chains: A,B,C
NODAMURA VIRUS COAT PROTEINS protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 26624
95 % 1 1 22434 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 1 21784
70 % 1 1 19995
50 % 1 1 17342
40 % 4 5 4046
30 % 5 6 3142
Entity #2 | Chains: D,E,F
NODAMURA VIRUS COAT PROTEINS protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 30783
95 % 1 1 25485
90 % 1 1 24631
70 % 1 1 22377
50 % 1 1 19363
40 % 1 1 17230
30 % 1 1 14777

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures