Sequence Similarity Clusters for the Entities in PDB 1NOP

Entity #1 | Chains: D,F
5'-D(*AP*GP*AP*GP*TP*T)-3' dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
tyrosyl-DNA phosphodiesterase 1 protein, length: 485 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 11 2250
95 % 12 12 2632 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 12 12 2678
70 % 12 12 2662
50 % 12 12 2633
40 % 12 12 2581
30 % 12 12 2440
Entity #3 | Chains: C
topoisomerase I-derived peptide protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.