Sequence Similarity Clusters for the Entities in PDB 1NOP

Entity #1 | Chains: D,F
5'-D(*AP*GP*AP*GP*TP*T)-3' dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
tyrosyl-DNA phosphodiesterase 1 protein, length: 485 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 13 1808
95 % 13 14 2209 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 13 14 2261
70 % 13 14 2257
50 % 13 14 2241
40 % 13 14 2234
30 % 13 14 2131
Entity #3 | Chains: C
topoisomerase I-derived peptide protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures