Sequence Similarity Clusters for the Entities in PDB 1NN8

Entity #1 | Chains: R,S,T
poliovirus receptor protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 14195
95 % 2 3 13424
90 % 2 3 13205
70 % 2 3 12417
50 % 2 3 11083
40 % 2 3 10050
30 % 9 10 2806
Entity #2 | Chains: 1
coat protein VP1 protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 21 2153
95 % 24 25 2202
90 % 24 25 2270
70 % 33 34 1572
50 % 39 40 1370
40 % 115 148 283
30 % 115 148 287
Entity #3 | Chains: 2
coat protein VP2 protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 29 1377
95 % 30 31 1693
90 % 30 31 1725
70 % 45 46 1134
50 % 117 150 302
40 % 117 150 318
30 % 142 178 170
Entity #4 | Chains: 3
coat protein VP3 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 31 1254
95 % 30 31 1698
90 % 30 31 1730
70 % 45 46 1136
50 % 81 114 433
40 % 126 159 263
30 % 153 189 154
Entity #5 | Chains: 4
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2210
95 % 23 23 2588
90 % 30 31 1765
70 % 54 82 578
50 % 87 116 431
40 % 87 116 470
30 % 87 116 460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.