Sequence Similarity Clusters for the Entities in PDB 1NN8

Entity #1 | Chains: R,S,T
poliovirus receptor protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 15151
95 % 2 3 14272
90 % 2 3 14051
70 % 2 3 13224
50 % 2 3 11759
40 % 2 3 10657
30 % 9 10 2965
Entity #2 | Chains: 1
coat protein VP1 protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 21 2325
95 % 24 25 2352
90 % 24 25 2418
70 % 35 36 1556
50 % 42 43 1335
40 % 127 160 277
30 % 127 160 287
Entity #3 | Chains: 2
coat protein VP2 protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 29 1485
95 % 30 31 1813
90 % 30 31 1851
70 % 48 49 1128
50 % 127 160 315
40 % 127 160 329
30 % 159 195 167
Entity #4 | Chains: 3
coat protein VP3 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 31 1360
95 % 30 31 1817
90 % 30 31 1854
70 % 48 49 1130
50 % 136 169 244
40 % 138 171 260
30 % 174 210 149
Entity #5 | Chains: 4
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2390
95 % 23 23 2762
90 % 32 33 1740
70 % 59 87 576
50 % 93 122 441
40 % 94 123 466
30 % 94 123 462

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures