Sequence Similarity Clusters for the Entities in PDB 1NN8

Entity #1 | Chains: R,S,T
poliovirus receptor protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 14072
95 % 2 3 13299
90 % 2 3 13088
70 % 2 3 12315
50 % 2 3 11000
40 % 2 3 9972
30 % 9 10 2787
Entity #2 | Chains: 1
coat protein VP1 protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 21 2137
95 % 24 25 2181
90 % 24 25 2251
70 % 33 34 1562
50 % 39 40 1361
40 % 115 148 281
30 % 115 148 285
Entity #3 | Chains: 2
coat protein VP2 protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 29 1364
95 % 30 31 1683
90 % 30 31 1710
70 % 45 46 1128
50 % 117 150 299
40 % 117 150 316
30 % 142 178 170
Entity #4 | Chains: 3
coat protein VP3 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 31 1238
95 % 30 31 1688
90 % 30 31 1714
70 % 45 46 1130
50 % 81 114 430
40 % 126 159 262
30 % 153 189 152
Entity #5 | Chains: 4
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2193
95 % 23 23 2569
90 % 30 31 1744
70 % 54 82 571
50 % 87 116 426
40 % 87 116 466
30 % 87 116 456

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.