Sequence Similarity Clusters for the Entities in PDB 1NN8

Entity #1 | Chains: R,S,T
poliovirus receptor protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 14447
95 % 2 3 13645
90 % 2 3 13423
70 % 2 3 12624
50 % 2 3 11246
40 % 2 3 10198
30 % 9 10 2847
Entity #2 | Chains: 1
coat protein VP1 protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 21 2196
95 % 24 25 2250
90 % 24 25 2316
70 % 35 36 1486
50 % 41 42 1307
40 % 122 155 275
30 % 122 155 282
Entity #3 | Chains: 2
coat protein VP2 protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 29 1415
95 % 30 31 1737
90 % 30 31 1769
70 % 47 48 1102
50 % 124 157 294
40 % 124 157 307
30 % 156 192 164
Entity #4 | Chains: 3
coat protein VP3 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 31 1290
95 % 30 31 1741
90 % 30 31 1773
70 % 47 48 1105
50 % 131 164 241
40 % 133 166 257
30 % 167 203 147
Entity #5 | Chains: 4
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2262
95 % 23 23 2633
90 % 32 33 1659
70 % 59 87 548
50 % 93 122 421
40 % 94 123 446
30 % 94 123 445

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.