Sequence Similarity Clusters for the Entities in PDB 1NN8

Entity #1 | Chains: R,S,T
poliovirus receptor protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 14900
95 % 2 3 14067
90 % 2 3 13841
70 % 2 3 13024
50 % 2 3 11581
40 % 2 3 10500
30 % 9 10 2928
Entity #2 | Chains: 1
coat protein VP1 protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 21 2279
95 % 24 25 2314
90 % 24 25 2377
70 % 35 36 1531
50 % 41 42 1344
40 % 126 159 276
30 % 126 159 285
Entity #3 | Chains: 2
coat protein VP2 protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 29 1466
95 % 30 31 1787
90 % 30 31 1823
70 % 47 48 1136
50 % 126 159 303
40 % 126 159 315
30 % 158 194 165
Entity #4 | Chains: 3
coat protein VP3 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 31 1336
95 % 30 31 1791
90 % 30 31 1826
70 % 47 48 1139
50 % 135 168 240
40 % 137 170 258
30 % 173 209 148
Entity #5 | Chains: 4
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2342
95 % 23 23 2714
90 % 32 33 1712
70 % 59 87 565
50 % 93 122 435
40 % 94 123 463
30 % 94 123 460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.