Sequence Similarity Clusters for the Entities in PDB 1NN8

Entity #1 | Chains: R,S,T
poliovirus receptor protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 14671
95 % 2 3 13864
90 % 2 3 13647
70 % 2 3 12867
50 % 2 3 11449
40 % 2 3 10386
30 % 9 10 2888
Entity #2 | Chains: 1
coat protein VP1 protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 21 2227
95 % 24 25 2283
90 % 24 25 2347
70 % 35 36 1507
50 % 41 42 1328
40 % 122 155 276
30 % 122 155 284
Entity #3 | Chains: 2
coat protein VP2 protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 29 1434
95 % 30 31 1764
90 % 30 31 1798
70 % 47 48 1117
50 % 124 157 298
40 % 124 157 313
30 % 156 192 165
Entity #4 | Chains: 3
coat protein VP3 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 31 1305
95 % 30 31 1768
90 % 30 31 1801
70 % 47 48 1120
50 % 131 164 242
40 % 133 166 260
30 % 169 205 146
Entity #5 | Chains: 4
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2292
95 % 23 23 2667
90 % 32 33 1686
70 % 59 87 554
50 % 93 122 427
40 % 94 123 454
30 % 94 123 453

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.