Sequence Similarity Clusters for the Entities in PDB 1NN8

Entity #1 | Chains: R,S,T
poliovirus receptor protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 16931
95 % 2 3 15710
90 % 2 3 15383
70 % 2 3 14394
50 % 2 3 12706
40 % 2 3 11396
30 % 9 10 3041
Entity #2 | Chains: 1
coat protein VP1 protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 25 2186
95 % 24 25 2487
90 % 24 25 2558
70 % 35 36 1581
50 % 54 57 1055
40 % 127 160 295
30 % 127 160 312
Entity #3 | Chains: 2
coat protein VP2 protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 31 1619
95 % 30 31 1927
90 % 30 31 1969
70 % 48 49 1163
50 % 127 160 341
40 % 127 160 368
30 % 161 197 181
Entity #4 | Chains: 3
coat protein VP3 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 33 1496
95 % 32 33 1766
90 % 32 33 1810
70 % 48 49 1173
50 % 136 169 254
40 % 138 171 279
30 % 174 210 164
Entity #5 | Chains: 4
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2740
95 % 21 21 3063
90 % 32 33 1796
70 % 59 87 595
50 % 93 122 457
40 % 94 123 487
30 % 94 123 487

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures