Sequence Similarity Clusters for the Entities in PDB 1NMU

Entity #1 | Chains: A,C
maltose-binding periplasmic protein protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 60 378
95 % 77 112 220 Flexibility: Low
Max RMSD: 8.8, Avg RMSD: 2.1
PDBFlex
90 % 84 132 153
70 % 112 180 96
50 % 112 180 134
40 % 112 180 150
30 % 127 197 145
Entity #2 | Chains: B,D
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 69 266
95 % 1 69 368 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.1
PDBFlex
90 % 1 70 387
70 % 1 70 423
50 % 2 117 321
40 % 2 117 341
30 % 14 133 293

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures