Sequence Similarity Clusters for the Entities in PDB 1NMU

Entity #1 | Chains: A,C
maltose-binding periplasmic protein protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 70 321
95 % 79 115 220 Flexibility: Low
Max RMSD: 8.8, Avg RMSD: 2.1
PDBFlex
90 % 89 139 150
70 % 92 144 168
50 % 94 148 200
40 % 94 148 217
30 % 127 184 199
Entity #2 | Chains: B,D
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 73 274
95 % 1 73 354 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.1
PDBFlex
90 % 1 73 376
70 % 1 73 413
50 % 2 125 307
40 % 2 125 340
30 % 41 269 155

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures