Sequence Similarity Clusters for the Entities in PDB 1NMQ

Entity #1 | Chains: A,B
Caspase-3 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 2390
95 % 55 58 490 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 0.6
PDBFlex
90 % 55 58 526
70 % 55 58 559
50 % 62 78 425
40 % 78 101 246
30 % 83 113 227

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures