Sequence Similarity Clusters for the Entities in PDB 1NMP

Entity #1 | Chains: A,B,C,D,E,F
Hypothetical protein ybgI protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 5108
95 % 2 2 5825 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 5840
70 % 2 2 5722
50 % 2 2 5393
40 % 2 2 5072
30 % 2 3 3979

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures