Sequence Similarity Clusters for the Entities in PDB 1NMO

Entity #1 | Chains: A,B,C,D,E,F
Hypothetical protein ybgI protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 5238
95 % 1 2 5950 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 2 5971
70 % 1 2 5841
50 % 1 2 5499
40 % 1 2 5165
30 % 1 3 4066

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures