Sequence Similarity Clusters for the Entities in PDB 1NMM

Entity #1 | Chains: A,C
ALPHA-LACTALBUMIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 2363
95 % 2 12 2653 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 2 12 2721
70 % 2 12 2702
50 % 11 29 968
40 % 796 1029 10
30 % 796 1029 18
Entity #2 | Chains: B,D
BETA-1,4-GALACTOSYLTRANSFERASE protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 15 1706
95 % 3 20 1458 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 8 37 612
70 % 8 37 656
50 % 8 37 704
40 % 10 41 704
30 % 10 41 709

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures