Sequence Similarity Clusters for the Entities in PDB 1NMM

Entity #1 | Chains: A,C
ALPHA-LACTALBUMIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 2593
95 % 2 12 2876 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 2 12 2938
70 % 2 12 2909
50 % 11 29 1008
40 % 817 1054 10
30 % 817 1054 20
Entity #2 | Chains: B,D
BETA-1,4-GALACTOSYLTRANSFERASE protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 15 1797
95 % 3 20 1550 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 9 39 618
70 % 9 39 667
50 % 9 39 707
40 % 11 43 706
30 % 11 43 709

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures