Sequence Similarity Clusters for the Entities in PDB 1NMK

Entity #1 | Chains: A,B
Peptidyl-prolyl cis-trans isomerase A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 79 112 116
95 % 89 126 146 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 89 127 156
70 % 140 184 133
50 % 167 223 113
40 % 174 241 132
30 % 180 251 132

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures