Sequence Similarity Clusters for the Entities in PDB 1NME

Entity #1 | Chains: A
Caspase-3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 37 728
95 % 3 40 896 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 3 40 929
70 % 3 40 956
50 % 3 41 965
40 % 4 48 723
30 % 4 48 715
Entity #2 | Chains: B
Caspase-3 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 45983
95 % 3 39 899 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 3 42 818
70 % 3 42 859
50 % 3 66 440
40 % 3 67 461
30 % 4 83 319

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.