Sequence Similarity Clusters for the Entities in PDB 1NME

Entity #1 | Chains: A
Caspase-3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 39 808
95 % 3 40 952 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 40 978
70 % 3 40 1015
50 % 3 41 1028
40 % 4 48 799
30 % 4 48 798
Entity #2 | Chains: B
Caspase-3 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 35265
95 % 7 53 625 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 7 56 603
70 % 7 56 645
50 % 7 80 409
40 % 7 81 430
30 % 8 97 319

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures