Sequence Similarity Clusters for the Entities in PDB 1NME

Entity #1 | Chains: A
Caspase-3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 37 771
95 % 3 40 944 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 40 975
70 % 3 40 1004
50 % 3 41 1018
40 % 4 48 783
30 % 4 48 772
Entity #2 | Chains: B
Caspase-3 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48297
95 % 7 53 620 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 7 56 600
70 % 7 56 632
50 % 7 80 399
40 % 7 81 421
30 % 8 97 297

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures