Sequence Similarity Clusters for the Entities in PDB 1NMD

Entity #1 | Chains: A
Actin protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 24877
95 % 40 174 15
90 % 41 179 16
70 % 42 182 25
50 % 42 184 38
40 % 42 203 47
30 % 42 223 54
Entity #2 | Chains: G
Gelsolin protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 13 3509
95 % 8 25 2099 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 8 25 2154
70 % 8 25 2158
50 % 8 25 2135
40 % 8 25 2131
30 % 8 25 2038

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.