Sequence Similarity Clusters for the Entities in PDB 1NMD

Entity #1 | Chains: A
Actin protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26488
95 % 40 197 9 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 41 202 10
70 % 43 207 13
50 % 43 214 15
40 % 43 233 23
30 % 43 253 38
Entity #2 | Chains: G
Gelsolin protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 16 2999
95 % 9 29 1855 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 9 29 1896
70 % 9 29 1929
50 % 9 29 1949
40 % 9 29 1955
30 % 9 29 1884

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures