Sequence Similarity Clusters for the Entities in PDB 1NMC

Entity #1 | Chains: A,N
NEURAMINIDASE protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 24 1802
95 % 40 44 1090 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 55 59 827
70 % 63 67 551
50 % 129 147 187
40 % 129 147 202
30 % 149 170 152
Entity #2 | Chains: B,H
SINGLE CHAIN ANTIBODY protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29782
95 % 3 4 15143 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 4 14872
70 % 44 85 266
50 % 376 591 7
40 % 603 945 5
30 % 673 1074 7
Entity #3 | Chains: C,L
SINGLE CHAIN ANTIBODY protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30035
95 % 3 4 15216 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 6 8 6602
70 % 122 192 73
50 % 195 309 23
40 % 604 945 5
30 % 674 1074 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures