Sequence Similarity Clusters for the Entities in PDB 1NMC

Entity #1 | Chains: A,N
NEURAMINIDASE protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 24 1761
95 % 40 44 1070 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 55 59 811
70 % 63 67 515
50 % 129 147 182
40 % 129 147 199
30 % 149 170 150
Entity #2 | Chains: B,H
SINGLE CHAIN ANTIBODY protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29177
95 % 3 4 14865 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 4 14595
70 % 44 85 259
50 % 365 576 7
40 % 592 929 5
30 % 661 1056 7
Entity #3 | Chains: C,L
SINGLE CHAIN ANTIBODY protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29430
95 % 3 4 14936 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 6 8 6485
70 % 122 191 72
50 % 195 308 21
40 % 593 929 5
30 % 662 1056 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.