Sequence Similarity Clusters for the Entities in PDB 1NMB

Entity #1 | Chains: N
N9 NEURAMINIDASE protein, length: 470 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50938
95 % 1 1 37404
90 % 1 1 35769
70 % 1 1 31925
50 % 1 1 27381
40 % 4 8 2773
30 % 4 8 2589
Entity #2 | Chains: L
FAB NC10 protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 45587
95 % 1 4 14589
90 % 4 8 6345
70 % 92 188 71
50 % 142 302 22
40 % 412 887 5
30 % 459 1013 7
Entity #3 | Chains: H
FAB NC10 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66043
95 % 1 4 14526 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 4 14252
70 % 26 82 258
50 % 252 540 8
40 % 413 887 5
30 % 460 1013 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.