1NMB

THE STRUCTURE OF A COMPLEX BETWEEN THE NC10 ANTIBODY AND INFLUENZA VIRUS NEURAMINIDASE AND COMPARISON WITH THE OVERLAPPING BINDING SITE OF THE NC41 ANTIBODY


Sequence Similarity Clusters for the Entities in PDB 1NMB

Entity #1 | Chains: N
N9 NEURAMINIDASE protein, length: 470 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52101
95 % 1 1 42973
90 % 1 1 40908
70 % 1 1 36126
50 % 1 1 30655
40 % 4 8 2945
30 % 4 8 2727
Entity #2 | Chains: L
FAB NC10 protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40888
95 % 1 4 14289 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 8 6629
70 % 101 215 58
50 % 145 317 23
40 % 164 361 26
30 % 2627 7168 1
Entity #3 | Chains: H
FAB NC10 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 16212
95 % 1 4 15055 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 4 14753
70 % 28 87 260
50 % 281 609 6
40 % 2161 5750 1
30 % 2628 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures