Sequence Similarity Clusters for the Entities in PDB 1NMB

Entity #1 | Chains: N
N9 NEURAMINIDASE protein, length: 470 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51612
95 % 1 1 37902
90 % 1 1 36228
70 % 1 1 32278
50 % 1 1 27653
40 % 4 8 2809
30 % 4 8 2622
Entity #2 | Chains: L
FAB NC10 protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46204
95 % 1 4 14811 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 8 6420
70 % 92 191 72
50 % 143 305 21
40 % 425 916 5
30 % 472 1042 7
Entity #3 | Chains: H
FAB NC10 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66987
95 % 1 4 14741 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 4 14472
70 % 26 82 259
50 % 264 566 7
40 % 426 916 5
30 % 473 1042 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.