Sequence Similarity Clusters for the Entities in PDB 1NMB

Entity #1 | Chains: N
N9 NEURAMINIDASE protein, length: 470 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52279
95 % 1 1 38400
90 % 1 1 36680
70 % 1 1 32644
50 % 1 1 27965
40 % 4 8 2840
30 % 4 8 2655
Entity #2 | Chains: L
FAB NC10 protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46787
95 % 1 4 14994 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 8 6511
70 % 92 191 72
50 % 145 308 21
40 % 434 933 5
30 % 483 1061 7
Entity #3 | Chains: H
FAB NC10 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67836
95 % 1 4 14923 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 4 14654
70 % 28 85 260
50 % 271 580 7
40 % 435 933 5
30 % 484 1061 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures