Sequence Similarity Clusters for the Entities in PDB 1NMA

Entity #1 | Chains: N
N9 NEURAMINIDASE protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52005
95 % 43 44 1037 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 54 55 859
70 % 62 63 527
50 % 139 143 179
40 % 139 143 196
30 % 161 166 146
Entity #2 | Chains: L
FAB NC10 protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 45232
95 % 4 4 14461 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 7 8 6272
70 % 138 187 74
50 % 219 301 22
40 % 662 882 5
30 % 738 1008 7
Entity #3 | Chains: H
FAB NC10 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65562
95 % 4 4 14396 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 4 14127
70 % 53 82 257
50 % 403 536 8
40 % 663 882 5
30 % 739 1008 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.