Sequence Similarity Clusters for the Entities in PDB 1NMA

Entity #1 | Chains: N
N9 NEURAMINIDASE protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54550
95 % 43 44 1090 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 58 59 827
70 % 66 67 551
50 % 143 147 187
40 % 143 147 202
30 % 165 170 152
Entity #2 | Chains: L
FAB NC10 protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47470
95 % 4 4 15216 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 7 8 6602
70 % 137 192 73
50 % 221 309 23
40 % 707 945 5
30 % 786 1074 7
Entity #3 | Chains: H
FAB NC10 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68746
95 % 4 4 15143 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 4 14872
70 % 55 85 266
50 % 446 591 7
40 % 708 945 5
30 % 787 1074 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures