Sequence Similarity Clusters for the Entities in PDB 1NMA

Entity #1 | Chains: N
N9 NEURAMINIDASE protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53469
95 % 43 44 1069 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 58 59 810
70 % 66 67 512
50 % 143 147 181
40 % 143 147 199
30 % 165 170 150
Entity #2 | Chains: L
FAB NC10 protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46512
95 % 4 4 14920 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 7 8 6479
70 % 137 191 72
50 % 221 308 21
40 % 696 929 5
30 % 773 1056 7
Entity #3 | Chains: H
FAB NC10 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67461
95 % 4 4 14849 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 4 14579
70 % 55 85 257
50 % 435 576 7
40 % 697 929 5
30 % 774 1056 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.