Sequence Similarity Clusters for the Entities in PDB 1NM5

Entity #1 | Chains: A,B
NAD(P) transhydrogenase subunit alpha part 1 protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34169
95 % 8 15 1323 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 8 15 1347
70 % 8 15 1363
50 % 8 16 1345
40 % 16 26 937
30 % 26 38 554
Entity #2 | Chains: C
NAD(P) transhydrogenase subunit beta protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 9228
95 % 4 9 7873 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 4 9 7816
70 % 4 9 7582
50 % 4 9 6986
40 % 7 12 4056
30 % 7 12 3743

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures