Sequence Similarity Clusters for the Entities in PDB 1NM5

Entity #1 | Chains: A,B
NAD(P) transhydrogenase subunit alpha part 1 protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33746
95 % 8 15 1306 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 8 15 1331
70 % 8 15 1347
50 % 8 16 1325
40 % 16 26 923
30 % 26 38 549
Entity #2 | Chains: C
NAD(P) transhydrogenase subunit beta protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 9097
95 % 4 9 7770 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 4 9 7722
70 % 4 9 7503
50 % 4 9 6905
40 % 7 12 4005
30 % 7 12 3697

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.