Sequence Similarity Clusters for the Entities in PDB 1NM5

Entity #1 | Chains: A,B
NAD(P) transhydrogenase subunit alpha part 1 protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 15 1183
95 % 8 15 1397 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 8 15 1420
70 % 8 15 1436
50 % 8 21 1413
40 % 16 26 960
30 % 26 38 592
Entity #2 | Chains: C
NAD(P) transhydrogenase subunit beta protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 9403
95 % 4 9 8249 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 4 9 8178
70 % 4 9 7876
50 % 4 9 7243
40 % 7 12 4147
30 % 7 12 3758

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures