Sequence Similarity Clusters for the Entities in PDB 1NLW

Entity #1 | Chains: F,G,H,J
5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,D
MAD PROTEIN protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43811
95 % 1 1 36616 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 1 1 34959
70 % 1 1 31091
50 % 1 1 26471
40 % 1 1 23232
30 % 1 1 19355
Entity #3 | Chains: B,E
MAX PROTEIN protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 11371
95 % 2 5 8176 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 2 5 8105
70 % 2 5 7806
50 % 2 5 7177
40 % 3 6 5594
30 % 3 6 4927

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures