Sequence Similarity Clusters for the Entities in PDB 1NLW

Entity #1 | Chains: F,G,H,J
5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,D
MAD PROTEIN protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45874
95 % 1 1 34251
90 % 1 1 32770
70 % 1 1 29245
50 % 1 1 25072
40 % 1 1 22120
30 % 1 1 18734
Entity #3 | Chains: B,E
MAX PROTEIN protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 10304
95 % 2 5 7649
90 % 2 5 7608
70 % 2 5 7355
50 % 2 5 6801
40 % 3 6 5272
30 % 3 6 4743

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.