Sequence Similarity Clusters for the Entities in PDB 1NLW

Entity #1 | Chains: F,G,H,J
5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,D
MAD PROTEIN protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46988
95 % 1 1 35102
90 % 1 1 33557
70 % 1 1 29920
50 % 1 1 25624
40 % 1 1 22607
30 % 1 1 19147
Entity #3 | Chains: B,E
MAX PROTEIN protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10595
95 % 2 5 7865 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 2 5 7824
70 % 2 5 7545
50 % 2 5 6949
40 % 3 6 5397
30 % 3 6 4858

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.