Sequence Similarity Clusters for the Entities in PDB 1NL4

Entity #1 | Chains: A
Protein farnesyltransferase alpha subunit protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 10263
95 % 5 10 6840 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 5 10 6825
70 % 5 10 6667
50 % 5 10 6191
40 % 5 10 5791
30 % 19 25 2246
Entity #2 | Chains: B
Protein farnesyltransferase beta subunit protein, length: 401 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 41 950
95 % 48 56 903 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 48 56 937
70 % 48 56 969
50 % 48 56 1018
40 % 48 56 1040
30 % 48 56 1020

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures