Sequence Similarity Clusters for the Entities in PDB 1NL0

Entity #1 | Chains: L
anti-factor IX antibody, 10C12, chain L protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27859
95 % 1 2 23236 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 44 94 234
70 % 999 2362 1
50 % 2042 4781 1
40 % 2042 4781 1
30 % 2301 5635 1
Entity #2 | Chains: H
anti-factor IX antibody, 10C12, chain H protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27638
95 % 1 2 23080 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 89 229 38
70 % 986 2311 2
50 % 2043 4781 1
40 % 2043 4781 1
30 % 2302 5635 1
Entity #3 | Chains: G
factor IX protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73610
95 % 1 1 51164
90 % 1 1 48531
70 % 1 1 42564
50 % 1 1 36299
40 % 1 1 31943
30 % 1 1 26998

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures