Sequence Similarity Clusters for the Entities in PDB 1NL0

Entity #1 | Chains: L
anti-factor IX antibody, 10C12, chain L protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29987
95 % 1 2 22808 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 46 100 233
70 % 1071 2519 1
50 % 2190 5107 1
40 % 2517 5756 1
30 % 3066 7175 1
Entity #2 | Chains: H
anti-factor IX antibody, 10C12, chain H protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28309
95 % 1 2 24773 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 115 275 18
70 % 1061 2478 2
50 % 2191 5107 1
40 % 2518 5756 1
30 % 3067 7175 1
Entity #3 | Chains: G
factor IX protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49753
95 % 1 1 41181
90 % 1 1 39235
70 % 3 6 12552
50 % 3 6 11162
40 % 3 6 10037
30 % 3 6 8566

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures