Sequence Similarity Clusters for the Entities in PDB 1NL0

Entity #1 | Chains: L
anti-factor IX antibody, 10C12, chain L protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27048
95 % 1 2 22537 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 41 87 242
70 % 949 2264 1
50 % 1942 4587 1
40 % 1942 4587 1
30 % 2186 5392 1
Entity #2 | Chains: H
anti-factor IX antibody, 10C12, chain H protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26831
95 % 1 2 22385 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 81 212 40
70 % 940 2222 2
50 % 1943 4587 1
40 % 1943 4587 1
30 % 2187 5392 1
Entity #3 | Chains: G
factor IX protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71574
95 % 1 1 49704
90 % 1 1 47202
70 % 1 1 41560
50 % 1 1 35536
40 % 1 1 31297
30 % 1 1 26448

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.