Sequence Similarity Clusters for the Entities in PDB 1NL0

Entity #1 | Chains: L
anti-factor IX antibody, 10C12, chain L protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27534
95 % 1 2 22968 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 42 89 241
70 % 959 2287 1
50 % 1962 4633 1
40 % 1962 4633 1
30 % 2215 5461 1
Entity #2 | Chains: H
anti-factor IX antibody, 10C12, chain H protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27313
95 % 1 2 22815 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 84 217 39
70 % 950 2244 2
50 % 1963 4633 1
40 % 1963 4633 1
30 % 2216 5461 1
Entity #3 | Chains: G
factor IX protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72723
95 % 1 1 50568
90 % 1 1 48010
70 % 1 1 42149
50 % 1 1 35951
40 % 1 1 31646
30 % 1 1 26744

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.