Sequence Similarity Clusters for the Entities in PDB 1NKZ

Entity #1 | Chains: A,C,E
Light-harvesting protein B-800/850, alpha chain protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 3707
95 % 1 3 4494 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 1 3 4516
70 % 1 3 4435
50 % 1 4 3528
40 % 1 4 3406
30 % 1 4 3181
Entity #2 | Chains: B,D,F
Light-harvesting protein B-800/850, beta chain protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 3710
95 % 1 3 4499 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 3 4521
70 % 1 4 3626
50 % 1 4 3530
40 % 1 4 3408
30 % 1 4 3183

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.