Sequence Similarity Clusters for the Entities in PDB 1NKZ

Entity #1 | Chains: A,C,E
Light-harvesting protein B-800/850, alpha chain protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 4038
95 % 1 3 4389 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 1 3 4421
70 % 1 3 4322
50 % 1 4 3441
40 % 1 4 3288
30 % 1 4 3051
Entity #2 | Chains: B,D,F
Light-harvesting protein B-800/850, beta chain protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 4039
95 % 1 3 4390 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 3 4422
70 % 1 4 3443
50 % 1 4 3364
40 % 1 4 3231
30 % 1 4 3000

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures