Sequence Similarity Clusters for the Entities in PDB 1NKZ

Entity #1 | Chains: A,C,E
Light-harvesting protein B-800/850, alpha chain protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 3918
95 % 1 3 4728 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 1 3 4755
70 % 1 3 4653
50 % 1 4 3687
40 % 1 4 3545
30 % 1 4 3315
Entity #2 | Chains: B,D,F
Light-harvesting protein B-800/850, beta chain protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 3921
95 % 1 3 4733 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 3 4760
70 % 1 4 3800
50 % 1 4 3689
40 % 1 4 3547
30 % 1 4 3317

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures