Sequence Similarity Clusters for the Entities in PDB 1NKW

Entity #1 | Chains: 0
23S ribosomal RNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 2435
95 % 3 19 3070
90 % 3 19 3115
70 % 3 19 3089
50 % 3 19 3018
40 % 3 19 2940
30 % 3 19 2762
Entity #11 | Chains: I
50S ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1424
95 % 4 24 1922
90 % 4 24 1966
70 % 93 176 85
50 % 126 326 53
40 % 126 327 60
30 % 217 495 30
Entity #12 | Chains: J
50S ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1420
95 % 4 24 1914
90 % 4 24 1956
70 % 4 24 1973
50 % 4 24 1979
40 % 125 312 76
30 % 216 481 35
Entity #13 | Chains: K
50S ribosomal protein L16 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 27 1198
95 % 4 27 1651
90 % 4 27 1681
70 % 93 180 82
50 % 125 317 57
40 % 125 317 71
30 % 125 317 84
Entity #14 | Chains: L
50S ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1433
95 % 4 24 1928
90 % 4 24 1973
70 % 4 24 1990
50 % 122 307 59
40 % 126 319 61
30 % 126 321 77
Entity #15 | Chains: M
50S ribosomal protein L18 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1574
95 % 4 24 1929
90 % 4 24 1974
70 % 4 24 1991
50 % 125 311 64
40 % 125 311 80
30 % 125 311 94
Entity #16 | Chains: N
50S ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 2438
95 % 3 19 3073
90 % 3 19 3118
70 % 3 19 3093
50 % 3 19 3022
40 % 3 19 2942
30 % 3 19 2765
Entity #17 | Chains: O
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1165
95 % 4 28 1612
90 % 4 28 1644
70 % 4 28 1679
50 % 126 317 54
40 % 126 321 63
30 % 126 321 78
Entity #18 | Chains: P
50S ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1170
95 % 4 28 1616
90 % 4 28 1648
70 % 4 28 1683
50 % 97 189 116
40 % 125 312 77
30 % 125 312 91
Entity #19 | Chains: Q
50S ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1162
95 % 4 30 1490
90 % 4 30 1526
70 % 4 30 1554
50 % 4 30 1599
40 % 4 30 1614
30 % 4 30 1576
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L23 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 26 1285
95 % 4 26 1760
90 % 4 26 1802
70 % 4 26 1826
50 % 93 179 121
40 % 125 318 69
30 % 192 396 56
Entity #21 | Chains: S
50S ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 25 1327
95 % 4 25 1819
90 % 4 25 1862
70 % 4 25 1883
50 % 125 315 60
40 % 125 315 73
30 % 125 317 85
Entity #22 | Chains: T
general stress protein CTC protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 25 1604
95 % 3 25 2140
90 % 3 25 2202
70 % 3 25 2206
50 % 3 25 2187
40 % 3 25 2184
30 % 3 25 2090
Entity #23 | Chains: U
50S ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 29 1100
95 % 4 29 1529
90 % 4 29 1565
70 % 33 156 168
50 % 123 310 62
40 % 123 310 78
30 % 123 310 92
Entity #24 | Chains: W
50S ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 26 1290
95 % 4 26 1765
90 % 4 26 1806
70 % 4 26 1832
50 % 4 26 1858
40 % 4 26 1862
30 % 125 314 96
Entity #25 | Chains: X
50S ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1443
95 % 4 24 1942
90 % 4 24 1987
70 % 4 24 2004
50 % 36 159 192
40 % 126 318 68
30 % 126 318 81
Entity #26 | Chains: Y
50S ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 3212
95 % 1 12 3957
90 % 1 12 3984
70 % 1 12 3909
50 % 89 190 123
40 % 89 191 140
30 % 89 191 154
Entity #27 | Chains: Z
50S ribosomal protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 34 946
95 % 4 34 1310
90 % 4 34 1333
70 % 4 34 1361
50 % 93 181 122
40 % 125 314 83
30 % 125 314 98
Entity #28 | Chains: 1
50S ribosomal protein L33 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 13031
95 % 1 6 12382
90 % 1 6 12187
70 % 1 6 11446
50 % 1 6 10259
40 % 1 6 9302
30 % 1 6 8113
Entity #29 | Chains: 2
50S ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1177
95 % 4 28 1621
90 % 4 28 1655
70 % 32 150 170
50 % 36 159 193
40 % 36 159 209
30 % 36 159 220
Entity #3 | Chains: A
50S ribosomal protein L2 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1537
95 % 4 24 1879
90 % 4 24 1920
70 % 94 177 84
50 % 126 314 61
40 % 126 314 74
30 % 126 314 88
Entity #30 | Chains: 3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1176
95 % 4 28 1620
90 % 4 28 1653
70 % 4 28 1688
50 % 94 181 119
40 % 126 310 82
30 % 126 310 97
Entity #31 | Chains: 4
50S ribosomal protein L36 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1585
95 % 3 22 2114
90 % 3 22 2178
70 % 62 138 154
50 % 90 262 91
40 % 90 262 113
30 % 90 262 126
Entity #4 | Chains: B
50S ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 27 1194
95 % 4 27 1646
90 % 4 27 1675
70 % 4 27 1711
50 % 131 321 58
40 % 131 321 72
30 % 131 322 86
Entity #5 | Chains: C
50S ribosomal protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 29 1093
95 % 4 29 1518
90 % 4 29 1555
70 % 4 29 1590
50 % 94 182 118
40 % 94 182 138
30 % 127 318 82
Entity #6 | Chains: D
50S ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1413
95 % 4 24 1908
90 % 4 24 1951
70 % 94 177 83
50 % 130 318 56
40 % 130 318 70
30 % 130 318 83
Entity #7 | Chains: E
50S ribosomal protein L6 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 38073
95 % 1 2 28975
90 % 1 2 27796
70 % 1 2 25003
50 % 1 2 21422
40 % 1 2 18850
30 % 1 2 15943
Entity #8 | Chains: F
50S ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 14474
95 % 1 5 13591
90 % 1 5 13346
70 % 1 5 12522
50 % 77 128 173
40 % 103 254 105
30 % 103 254 119
Entity #9 | Chains: G
50S ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 1897
95 % 4 21 2163
90 % 4 21 2224
70 % 19 62 442
50 % 48 214 135
40 % 48 217 150
30 % 48 220 165

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.