Sequence Similarity Clusters for the Entities in PDB 1NKW

Entity #1 | Chains: 0
23S ribosomal RNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 2407
95 % 3 19 3032
90 % 3 19 3079
70 % 3 19 3056
50 % 3 19 2987
40 % 3 19 2909
30 % 3 19 2727
Entity #11 | Chains: I
50S ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1406
95 % 4 24 1898
90 % 4 24 1941
70 % 93 176 85
50 % 125 315 53
40 % 125 316 63
30 % 215 479 31
Entity #12 | Chains: J
50S ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1402
95 % 4 24 1890
90 % 4 24 1931
70 % 4 24 1946
50 % 4 24 1955
40 % 124 304 76
30 % 214 468 38
Entity #13 | Chains: K
50S ribosomal protein L16 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 27 1184
95 % 4 27 1636
90 % 4 27 1665
70 % 93 180 82
50 % 124 306 60
40 % 124 306 74
30 % 124 306 89
Entity #14 | Chains: L
50S ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1415
95 % 4 24 1904
90 % 4 24 1948
70 % 4 24 1963
50 % 122 301 56
40 % 125 308 64
30 % 125 310 77
Entity #15 | Chains: M
50S ribosomal protein L18 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1554
95 % 4 24 1905
90 % 4 24 1949
70 % 4 24 1964
50 % 124 303 62
40 % 124 303 78
30 % 124 303 92
Entity #16 | Chains: N
50S ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 2410
95 % 3 19 3035
90 % 3 19 3082
70 % 3 19 3060
50 % 3 19 2991
40 % 3 19 2911
30 % 3 19 2730
Entity #17 | Chains: O
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1150
95 % 4 28 1595
90 % 4 28 1626
70 % 4 28 1657
50 % 125 309 54
40 % 125 310 65
30 % 125 310 79
Entity #18 | Chains: P
50S ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1156
95 % 4 28 1599
90 % 4 28 1630
70 % 4 28 1661
50 % 96 187 115
40 % 124 304 77
30 % 124 304 91
Entity #19 | Chains: Q
50S ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1147
95 % 4 30 1475
90 % 4 30 1510
70 % 4 30 1540
50 % 4 30 1584
40 % 4 30 1601
30 % 4 30 1560
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L23 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 26 1269
95 % 4 26 1740
90 % 4 26 1781
70 % 4 26 1799
50 % 93 179 121
40 % 124 310 68
30 % 191 388 57
Entity #21 | Chains: S
50S ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 25 1310
95 % 4 25 1797
90 % 4 25 1839
70 % 4 25 1854
50 % 124 307 58
40 % 124 307 73
30 % 124 309 84
Entity #22 | Chains: T
general stress protein CTC protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 25 1584
95 % 3 25 2115
90 % 3 25 2173
70 % 3 25 2172
50 % 3 25 2157
40 % 3 25 2155
30 % 3 25 2061
Entity #23 | Chains: U
50S ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 29 1086
95 % 4 29 1513
90 % 4 29 1548
70 % 33 150 167
50 % 123 303 61
40 % 123 303 75
30 % 123 303 90
Entity #24 | Chains: W
50S ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 26 1274
95 % 4 26 1745
90 % 4 26 1785
70 % 4 26 1805
50 % 4 26 1835
40 % 4 26 1843
30 % 124 306 96
Entity #25 | Chains: X
50S ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1425
95 % 4 24 1918
90 % 4 24 1962
70 % 4 24 1977
50 % 35 151 198
40 % 125 310 67
30 % 125 310 80
Entity #26 | Chains: Y
50S ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 3169
95 % 1 12 3898
90 % 1 12 3927
70 % 1 12 3853
50 % 89 185 126
40 % 89 185 143
30 % 89 185 156
Entity #27 | Chains: Z
50S ribosomal protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 34 933
95 % 4 34 1295
90 % 4 34 1317
70 % 4 34 1345
50 % 93 181 122
40 % 124 306 82
30 % 124 306 98
Entity #28 | Chains: 1
50S ribosomal protein L33 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 12888
95 % 1 6 12260
90 % 1 6 12064
70 % 1 6 11335
50 % 1 6 10165
40 % 1 6 9230
30 % 1 6 8058
Entity #29 | Chains: 2
50S ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1163
95 % 4 28 1604
90 % 4 28 1637
70 % 32 144 170
50 % 35 151 199
40 % 35 151 218
30 % 35 151 227
Entity #3 | Chains: A
50S ribosomal protein L2 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1518
95 % 4 24 1857
90 % 4 24 1896
70 % 94 177 84
50 % 125 303 63
40 % 125 303 79
30 % 125 303 93
Entity #30 | Chains: 3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1162
95 % 4 28 1603
90 % 4 28 1635
70 % 4 28 1666
50 % 94 181 119
40 % 125 302 81
30 % 125 302 97
Entity #31 | Chains: 4
50S ribosomal protein L36 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1566
95 % 3 22 2090
90 % 3 22 2148
70 % 61 133 155
50 % 89 251 92
40 % 89 251 114
30 % 89 251 127
Entity #4 | Chains: B
50S ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 27 1180
95 % 4 27 1630
90 % 4 27 1658
70 % 4 27 1690
50 % 130 313 57
40 % 130 313 71
30 % 130 314 86
Entity #5 | Chains: C
50S ribosomal protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 29 1079
95 % 4 29 1503
90 % 4 29 1539
70 % 4 29 1575
50 % 94 182 117
40 % 94 182 138
30 % 126 310 82
Entity #6 | Chains: D
50S ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1395
95 % 4 24 1884
90 % 4 24 1926
70 % 94 177 83
50 % 129 310 55
40 % 129 310 70
30 % 129 310 83
Entity #7 | Chains: E
50S ribosomal protein L6 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 37666
95 % 1 2 28672
90 % 1 2 27509
70 % 1 2 24753
50 % 1 2 21213
40 % 1 2 18673
30 % 1 2 15794
Entity #8 | Chains: F
50S ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 14315
95 % 1 5 13454
90 % 1 5 13207
70 % 1 5 12410
50 % 77 128 170
40 % 103 248 110
30 % 103 248 121
Entity #9 | Chains: G
50S ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 1871
95 % 4 21 2138
90 % 4 21 2195
70 % 19 62 435
50 % 48 209 137
40 % 48 212 152
30 % 48 215 168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.