Sequence Similarity Clusters for the Entities in PDB 1NKW

Entity #1 | Chains: 0
23S ribosomal RNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 2457
95 % 3 19 3089
90 % 3 19 3132
70 % 3 19 3103
50 % 3 19 3036
40 % 3 19 2958
30 % 3 19 2785
Entity #11 | Chains: I
50S ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1449
95 % 4 24 1952
90 % 4 24 2000
70 % 93 176 85
50 % 126 328 54
40 % 126 332 63
30 % 217 506 29
Entity #12 | Chains: J
50S ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1443
95 % 4 24 1940
90 % 4 24 1986
70 % 4 24 1999
50 % 4 24 1994
40 % 125 313 77
30 % 216 488 35
Entity #13 | Chains: K
50S ribosomal protein L16 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 27 1219
95 % 4 27 1674
90 % 4 27 1705
70 % 93 180 82
50 % 125 319 56
40 % 125 319 70
30 % 125 319 83
Entity #14 | Chains: L
50S ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1458
95 % 4 24 1959
90 % 4 24 2008
70 % 4 24 2016
50 % 122 308 59
40 % 126 321 64
30 % 126 323 79
Entity #15 | Chains: M
50S ribosomal protein L18 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1593
95 % 4 24 1960
90 % 4 24 2009
70 % 4 24 2017
50 % 125 313 62
40 % 125 313 78
30 % 125 313 92
Entity #16 | Chains: N
50S ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 2460
95 % 3 19 3092
90 % 3 19 3135
70 % 3 19 3108
50 % 3 19 3040
40 % 3 19 2960
30 % 3 19 2788
Entity #17 | Chains: O
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1183
95 % 4 28 1632
90 % 4 28 1663
70 % 4 28 1700
50 % 126 318 55
40 % 126 323 66
30 % 126 323 81
Entity #18 | Chains: P
50S ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1187
95 % 4 28 1636
90 % 4 28 1667
70 % 4 28 1704
50 % 97 189 117
40 % 125 313 79
30 % 125 313 93
Entity #19 | Chains: Q
50S ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1180
95 % 4 30 1507
90 % 4 30 1543
70 % 4 30 1569
50 % 4 30 1612
40 % 4 30 1625
30 % 4 30 1590
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L23 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 26 1310
95 % 4 26 1786
90 % 4 26 1833
70 % 4 26 1858
50 % 93 179 122
40 % 125 319 71
30 % 192 397 57
Entity #21 | Chains: S
50S ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 25 1350
95 % 4 25 1836
90 % 4 25 1884
70 % 4 25 1913
50 % 125 316 60
40 % 125 316 74
30 % 125 318 87
Entity #22 | Chains: T
general stress protein CTC protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 25 1620
95 % 3 25 2155
90 % 3 25 2219
70 % 3 25 2225
50 % 3 25 2203
40 % 3 25 2199
30 % 3 25 2104
Entity #23 | Chains: U
50S ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 29 1119
95 % 4 29 1546
90 % 4 29 1580
70 % 33 157 167
50 % 123 311 63
40 % 123 311 80
30 % 123 311 94
Entity #24 | Chains: W
50S ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 26 1316
95 % 4 26 1793
90 % 4 26 1840
70 % 4 26 1863
50 % 4 26 1874
40 % 4 26 1879
30 % 125 315 96
Entity #25 | Chains: X
50S ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1470
95 % 4 24 1977
90 % 4 24 2026
70 % 4 24 2031
50 % 36 160 193
40 % 126 319 69
30 % 126 319 82
Entity #26 | Chains: Y
50S ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 3239
95 % 1 12 3983
90 % 1 12 4008
70 % 1 12 3932
50 % 89 190 125
40 % 89 191 142
30 % 89 191 158
Entity #27 | Chains: Z
50S ribosomal protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 34 955
95 % 4 34 1320
90 % 4 34 1342
70 % 4 34 1370
50 % 93 181 123
40 % 125 315 84
30 % 125 315 98
Entity #28 | Chains: 1
50S ribosomal protein L33 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 13120
95 % 1 6 12461
90 % 1 6 12265
70 % 1 6 11517
50 % 1 6 10326
40 % 1 6 9363
30 % 1 6 8170
Entity #29 | Chains: 2
50S ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1194
95 % 4 28 1641
90 % 4 28 1674
70 % 32 151 170
50 % 36 160 194
40 % 36 160 211
30 % 36 160 223
Entity #3 | Chains: A
50S ribosomal protein L2 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1556
95 % 4 24 1897
90 % 4 24 1942
70 % 94 177 84
50 % 126 316 61
40 % 126 316 75
30 % 126 316 89
Entity #30 | Chains: 3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1193
95 % 4 28 1640
90 % 4 28 1672
70 % 4 28 1709
50 % 94 181 121
40 % 126 311 83
30 % 126 311 97
Entity #31 | Chains: 4
50S ribosomal protein L36 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1602
95 % 3 22 2128
90 % 3 22 2193
70 % 62 139 154
50 % 90 267 91
40 % 90 267 112
30 % 90 267 126
Entity #4 | Chains: B
50S ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 27 1211
95 % 4 27 1665
90 % 4 27 1695
70 % 4 27 1735
50 % 131 322 58
40 % 131 323 73
30 % 131 324 85
Entity #5 | Chains: C
50S ribosomal protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 29 1112
95 % 4 29 1534
90 % 4 29 1571
70 % 4 29 1606
50 % 94 182 119
40 % 94 182 138
30 % 127 319 84
Entity #6 | Chains: D
50S ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1437
95 % 4 24 1934
90 % 4 24 1980
70 % 94 177 83
50 % 130 319 57
40 % 130 319 72
30 % 130 319 86
Entity #7 | Chains: E
50S ribosomal protein L6 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 38446
95 % 1 2 29285
90 % 1 2 28094
70 % 1 2 25265
50 % 1 2 21646
40 % 1 2 19049
30 % 1 2 16137
Entity #8 | Chains: F
50S ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 14595
95 % 1 5 13701
90 % 1 5 13454
70 % 1 5 12622
50 % 77 128 174
40 % 103 255 105
30 % 103 256 119
Entity #9 | Chains: G
50S ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 1912
95 % 4 21 2180
90 % 4 21 2243
70 % 19 62 446
50 % 48 215 137
40 % 48 218 150
30 % 48 221 164

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.