Sequence Similarity Clusters for the Entities in PDB 1NKW

Entity #1 | Chains: 0
23S ribosomal RNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 2521
95 % 3 19 3160
90 % 3 19 3203
70 % 3 19 3170
50 % 3 19 3103
40 % 3 19 3030
30 % 3 19 2844
Entity #11 | Chains: I
50S ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1497
95 % 4 24 2005
90 % 4 24 2057
70 % 93 176 93
50 % 127 333 55
40 % 127 337 65
30 % 218 513 31
Entity #12 | Chains: J
50S ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1493
95 % 4 24 1994
90 % 4 24 2044
70 % 4 24 2049
50 % 4 24 2040
40 % 126 318 80
30 % 217 495 37
Entity #13 | Chains: K
50S ribosomal protein L16 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 27 1264
95 % 4 27 1710
90 % 4 27 1746
70 % 93 180 89
50 % 126 324 60
40 % 126 324 74
30 % 126 324 86
Entity #14 | Chains: L
50S ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1507
95 % 4 24 2012
90 % 4 24 2065
70 % 4 24 2069
50 % 122 311 67
40 % 127 326 67
30 % 127 328 80
Entity #15 | Chains: M
50S ribosomal protein L18 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1637
95 % 4 24 2013
90 % 4 24 2066
70 % 4 24 2070
50 % 126 318 69
40 % 126 318 81
30 % 126 318 92
Entity #16 | Chains: N
50S ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 2524
95 % 3 19 3163
90 % 3 19 3206
70 % 3 19 3175
50 % 3 19 3107
40 % 3 19 3032
30 % 3 19 2847
Entity #17 | Chains: O
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1226
95 % 4 28 1667
90 % 4 28 1698
70 % 4 28 1734
50 % 127 323 58
40 % 127 328 69
30 % 127 328 82
Entity #18 | Chains: P
50S ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1230
95 % 4 28 1671
90 % 4 28 1702
70 % 4 28 1738
50 % 98 191 121
40 % 126 318 82
30 % 126 318 94
Entity #19 | Chains: Q
50S ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1222
95 % 4 30 1535
90 % 4 30 1571
70 % 4 30 1602
50 % 4 30 1647
40 % 4 30 1659
30 % 4 30 1619
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L23 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 26 1357
95 % 4 26 1830
90 % 4 26 1877
70 % 4 26 1903
50 % 93 179 126
40 % 126 324 75
30 % 193 402 60
Entity #21 | Chains: S
50S ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 25 1397
95 % 4 25 1899
90 % 4 25 1949
70 % 4 25 1966
50 % 126 321 63
40 % 126 321 78
30 % 126 323 90
Entity #22 | Chains: T
general stress protein CTC protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 25 1670
95 % 3 25 2210
90 % 3 25 2277
70 % 3 25 2278
50 % 3 25 2258
40 % 3 25 2253
30 % 3 25 2159
Entity #23 | Chains: U
50S ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 29 1158
95 % 4 29 1575
90 % 4 29 1609
70 % 33 160 171
50 % 123 315 70
40 % 123 315 83
30 % 123 315 95
Entity #24 | Chains: W
50S ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 26 1361
95 % 4 26 1835
90 % 4 26 1881
70 % 4 26 1908
50 % 4 26 1919
40 % 4 26 1921
30 % 126 320 99
Entity #25 | Chains: X
50S ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1520
95 % 4 24 2033
90 % 4 24 2083
70 % 4 24 2083
50 % 37 165 197
40 % 127 324 72
30 % 127 324 84
Entity #26 | Chains: Y
50S ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 3309
95 % 1 12 4075
90 % 1 12 4099
70 % 1 12 4018
50 % 89 192 132
40 % 89 193 146
30 % 89 193 161
Entity #27 | Chains: Z
50S ribosomal protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 34 984
95 % 4 34 1357
90 % 4 34 1376
70 % 4 34 1397
50 % 93 181 130
40 % 126 319 86
30 % 126 319 101
Entity #28 | Chains: 1
50S ribosomal protein L33 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 13425
95 % 1 6 12752
90 % 1 6 12549
70 % 1 6 11781
50 % 1 6 10552
40 % 1 6 9572
30 % 1 6 8326
Entity #29 | Chains: 2
50S ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1239
95 % 4 28 1677
90 % 4 28 1710
70 % 32 154 176
50 % 37 165 198
40 % 37 165 214
30 % 37 165 223
Entity #3 | Chains: A
50S ribosomal protein L2 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1601
95 % 4 24 1959
90 % 4 24 2008
70 % 94 177 92
50 % 127 321 64
40 % 127 321 79
30 % 127 321 91
Entity #30 | Chains: 3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1237
95 % 4 28 1675
90 % 4 28 1707
70 % 4 28 1745
50 % 94 181 125
40 % 127 316 85
30 % 127 316 100
Entity #31 | Chains: 4
50S ribosomal protein L36 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1647
95 % 3 22 2179
90 % 3 22 2247
70 % 62 140 160
50 % 90 271 91
40 % 90 271 113
30 % 90 271 125
Entity #4 | Chains: B
50S ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 27 1256
95 % 4 27 1699
90 % 4 27 1734
70 % 4 27 1771
50 % 132 327 62
40 % 132 328 77
30 % 132 329 88
Entity #5 | Chains: C
50S ribosomal protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 29 1150
95 % 4 29 1565
90 % 4 29 1600
70 % 4 29 1640
50 % 94 182 124
40 % 94 182 142
30 % 128 324 87
Entity #6 | Chains: D
50S ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 24 1486
95 % 4 24 1989
90 % 4 24 2039
70 % 94 177 90
50 % 131 324 61
40 % 131 324 76
30 % 131 324 89
Entity #7 | Chains: E
50S ribosomal protein L6 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39271
95 % 1 2 29897
90 % 1 2 28664
70 % 1 2 25751
50 % 1 2 22028
40 % 1 2 19387
30 % 1 2 16409
Entity #8 | Chains: F
50S ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 14940
95 % 1 5 14026
90 % 1 5 13763
70 % 1 5 12907
50 % 77 128 180
40 % 103 258 109
30 % 103 259 123
Entity #9 | Chains: G
50S ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 1972
95 % 4 21 2234
90 % 4 21 2302
70 % 19 62 464
50 % 48 218 139
40 % 48 221 154
30 % 48 224 168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.