Sequence Similarity Clusters for the Entities in PDB 1NKV

Entity #1 | Chains: A,B,C
HYPOTHETICAL PROTEIN yjhP protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28065
95 % 1 1 23421 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.9
PDBFlex
90 % 1 1 22714
70 % 3 3 10103
50 % 3 3 9158
40 % 3 3 8378
30 % 3 3 7381

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures