Sequence Similarity Clusters for the Entities in PDB 1NKV

Entity #1 | Chains: A,B,C
HYPOTHETICAL PROTEIN yjhP protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27708
95 % 1 1 23125 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.9
PDBFlex
90 % 1 1 22435
70 % 3 3 9953
50 % 3 3 9027
40 % 3 3 8265
30 % 3 3 7284

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures