Sequence Similarity Clusters for the Entities in PDB 1NKT

Entity #1 | Chains: A,B
Preprotein translocase secA 1 subunit protein, length: 922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24928
95 % 1 2 17525 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 2 17106
70 % 1 2 15858
50 % 1 2 13895
40 % 8 21 1791
30 % 8 21 1745

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures